Comments (2)
Aikaterini-Chatzipli
commented on September 6, 2024
Hi Daniel,
I run into the same issue as Simon when running Bamsnap on RNA-seq bams. Thanks for developing Bamsnap, it's incredibly useful and easy to use for visualizing bams. Please let us know how it would be possible to tackle the KeyError.
Many thanks,
Katerina
from bamsnap.
lparsons
commented on September 6, 2024
I too have the same issue, using RNA-Seq data. It is possible this is because of the large junctions in the middle of reads?
from bamsnap.
Related Issues (20)
- Cant manage to get working with alternative FASTA HOT 6
- Error about reference index HOT 2
- Unclear error when using BAM from Nanopore data HOT 3
- Disabling .txt and .log output files HOT 1
- No html or zip output created with multiple threads HOT 2
- reference sequence with lowercase characters
- HTML created for multi-sample snaps can't load the snaps HOT 2
- Bamsnap can't recognize lower case letters in reference genomes
- Would you please support mm10? HOT 4
- Programatic use
- Runs into error with genomic region size in megabases HOT 1
- PacBio CCS reads support HOT 3
- bamsnap runs into error when `-process` option is used
- Plotting in Jupyter via library API?
- Specify custom annotation track?
- More of a question.
- IndexError: string index out of range HOT 1
- ValueError: y1 must be greater than or equal to y0 HOT 2
- Sort and color by tag
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