Comments (2)
I don't recommend using spaces in directory or file names :)
I'm using a widely used C++ command line parser called clipp, can't do much there..
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May be you can use escape character to help it recognize space.. should be worth giving it a try.
fastANI -q "/abcdef/aa.fa" -r "/a\ b/bb.fa" -o "123"
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Related Issues (20)
- No results in output directory? HOT 3
- Error in number of mapped fragments HOT 1
- FastANI output and matrix values do not match? HOT 1
- minimizer/kmer string compression HOT 5
- #query# fastANI HOT 4
- Gets the sequence of corresponding positions in --visualize output
- Can fastANI calculate a standard desviation for each ani value?
- Problem with M1 chip installation HOT 3
- Could not open
- The genome reference limit. HOT 1
- Threads not being utilised? HOT 4
- --minFrag HOT 1
- Ctest failing while building with cmake HOT 1
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- Multi-genome reference and query FASTAs for many-to-many queries
- Segmentation Fault in fastANI HOT 2
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- [Feature Request] Many-vs-Many upper triangle of pairwise genome ANI calculation HOT 3
- VRE
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