paoloinglese Goto Github PK

3d_desi

MATLAB scripts for the paper "Deep learning and 3D-DESI imaging reveal the hidden metabolic heterogeneity of cancer"

4dsegment

Deep learning cardiac segmentation and motion tracking

4dsegment2.0

byte_converter

Simple data units converter in PyQT5

desi_msi_recal

Companion code for the publication: Inglese, P., Huang, H., Wu, V., Lewis, M.R. and Takats, Z., 2021. Mass recalibration for desorption electrospray ionization mass spectrometry imaging using endogenous reference ions. biorXiv

ecgxai

Neatly packaged AI methods for explainable ECG analysis

genomicscourse

For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics

graph-u-nets

Pytorch implementation of Graph U-Nets (ICML19)

hexsticker

:sparkles: Hexagon sticker in R

hgp-sl

Hierarchical Graph Pooling with Structure Learning

ion_colocalization

Scripts used for the paper Inglese, P., Correia, G., Pruski, P., Glen, R. C., & Takats, Z. (2019). Colocalization features for classification of tumors using desorption electrospray ionization mass spectrometry imaging. Analytical chemistry.

m3c

Monte Carlo Reference-based Consensus Clustering

maldiquant

Quantitative Analysis of Mass Spectrometry Data

memory-map

mutools3d-imperial

R package for Mass Univariate Analysis of 3D Phenotypes

pyimzml

A parser to read .imzML files with python

pytorch_coma

simpleitk-notebooks

Jupyter notebooks for learning how to use SimpleITK

sputnik

SPUTNIK R package

sputnikexamples

Repository for the two data examples used in SPUTNIK R package

tut_maldiquant_msi

Tutorial preprocessing MSI using MALDIquant

ukbb_cardiac

Some code for processing and analysing UK Biobank cardiac MR images.

vade

Python code for paper - Variational Deep Embedding : A Generative Approach to Clustering

videos

Code for the manim-generated scenes used in 3blue1brown videos