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tarelli avatar tarelli commented on August 16, 2024

Some occurrence of this could be related to #13

from org.geppetto.

jrmartin avatar jrmartin commented on August 16, 2024

Seems to be a problem with the lems library and what is retured from ILEMSResultsContainer . The error log I get is this:

[2014-03-12 19:27:23.419] WARN http-bio-8080-exec-13 org.geppetto.simulation.SimulationService Initializing simulation
[2014-03-12 19:27:27.366] WARN http-bio-8080-exec-13 info (WARNING) Unused attribute in Component(id=passive type=ionChannelPassive): XMLAttribute(name, Passive conductance) at: org.lemsml.jlems.core.type.Component.resolve(Component.java:501)
[2014-03-12 19:27:27.378] INFO http-bio-8080-exec-13 info (INFO) checking metas net1 0 at: org.lemsml.jlems.core.api.LEMSBuilder.createLEMSStates(LEMSBuilder.java:110)
[2014-03-12 19:27:27.380] INFO http-bio-8080-exec-13 info (INFO) Optional path variable is absent PathDerivedVariable{varname=rateScale, path=q10Settings/q10, func=multiply, tgtvar=q10} at: org.lemsml.jlems.core.run.StateType.applyPathDerived(StateType.java:379)
[2014-03-12 19:27:27.380] INFO http-bio-8080-exec-13 info (INFO) Optional path variable is absent PathDerivedVariable{varname=rateScale, path=q10Settings/q10, func=multiply, tgtvar=q10} at:
[2014-03-12 19:27:27.381] INFO http-bio-8080-exec-13 info (INFO) Optional path variable is absent PathDerivedVariable{varname=rateScale, path=q10Settings/q10, func=multiply, tgtvar=q10} at:
[2014-03-12 19:27:27.523] ERROR http-bio-8080-exec-13 org.apache.coyote.http11.Http11Protocol Error reading request, ignored java.lang.RuntimeException: hhpop[0]/spiking not found in LEMS results:{}
at org.geppetto.simulator.jlems.UpdateLEMSStateTreeVisitor.visitSimpleStateNode(UpdateLEMSStateTreeVisitor.java:66)
at org.geppetto.core.model.state.SimpleStateNode.apply(SimpleStateNode.java:93)
at org.geppetto.core.model.state.CompositeStateNode.apply(CompositeStateNode.java:100)
at org.geppetto.core.model.state.CompositeStateNode.apply(CompositeStateNode.java:100)
at org.geppetto.simulator.jlems.JLEMSSimulatorService.populateStateTree(JLEMSSimulatorService.java:270)
at org.geppetto.simulator.jlems.JLEMSSimulatorService.initialize(JLEMSSimulatorService.java:136)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at com.sun.proxy.$Proxy90.initialize(Unknown Source)
at org.geppetto.simulation.SimulationThread.loadModel(SimulationThread.java:113)
at org.geppetto.simulation.SimulationService.loadModel(SimulationService.java:173)
at org.geppetto.simulation.SimulationService.load(SimulationService.java:167)
at org.geppetto.simulation.SimulationService.init(SimulationService.java:118)
at sun.reflect.GeneratedMethodAccessor125.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at com.sun.proxy.$Proxy131.init(Unknown Source)
at sun.reflect.GeneratedMethodAccessor125.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at com.sun.proxy.$Proxy130.init(Unknown Source)
at org.geppetto.frontend.GeppettoServletController.loadSimulation(GeppettoServletController.java:270)
at org.geppetto.frontend.GeppettoServletController.loadInMultiUserMode(GeppettoServletController.java:204)
at org.geppetto.frontend.GeppettoServletController.load(GeppettoServletController.java:183)
at org.geppetto.frontend.GeppettoMessageInbound.onTextMessage(GeppettoMessageInbound.java:137)
at org.apache.catalina.websocket.MessageInbound.onTextData(MessageInbound.java:74)
at org.apache.catalina.websocket.StreamInbound.doOnTextData(StreamInbound.java:186)
at org.apache.catalina.websocket.StreamInbound.onData(StreamInbound.java:134)
at org.apache.coyote.http11.upgrade.UpgradeProcessor.upgradeDispatch(UpgradeProcessor.java:83)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:587)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:722)

from org.geppetto.

tarelli avatar tarelli commented on August 16, 2024

Haven't seen this in a long while.

from org.geppetto.

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