Comments (1)
Hi @Dartomic,
Sorry, I had in my mind that I answered this already. First of all, thanks for testing out c302, it's highlighting some issues we've been un aware of.
The main issue is that the current c302 doesn't work on python >=3.11 (see here). This isn't c302 itself, but owmeta, which is a package used to extract metadata on the worm cells. This is unfortunately not actively updated anymore, and is not likely to work on py3.11 soon. c302 should in theory work fine without owmeta, but some code will have to be changed to not have it as an install requirement and catch cleanly when it's not found.
So your options are:
- create a virtual environment using conda or venv for py3.10, and everything should work better
- wait for us to update c302 to work without owmeta (a few weeks?)
- wait for owmeta to support py3.11 (a few months?)
Regarding your question on recording the neuron/muscle's response for different currents, see https://github.com/openworm/c302/blob/master/examples/parametersweep/README.md. This is the file to general that: https://github.com/openworm/c302/blob/master/examples/parametersweep/Sweep.py, but you'll need a working install of c302.
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Related Issues (20)
- Compare running times of NeuroML file generation with OpenWormReader vs Spreadsheet reader HOT 1
- Create a c302 DataTranslator and DataSources
- Update OpenWormReader to use the latest version of owmeta (pt 2)
- Clarify pipeline from ChannelWorm to c302
- Data c302
- Data Provenance HOT 5
- runnin sh test.sh in cmd HOT 3
- No module named 'bioparameters' HOT 4
- Can't connect to PyOpenWorm HOT 5
- Use OpenWorm backers data source to get backers for c302 network generation.
- first installation error : unable to download c302 module HOT 3
- Quick test problem HOT 2
- List and dictionary command line arguments from README not executable in some shells
- Move tests to travis-ci.com HOT 3
- owmeta installation fails on GH actions HOT 3
- Porting the computation of C302 neural network operations to my neural morphology chip. HOT 3
- Add WormNeuroAtlas to dependencies and add to tests
- fatal error: 'H5public.h' file not found HOT 1
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