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pgleeson avatar pgleeson commented on August 16, 2024

Hi @Dartomic,
Sorry, I had in my mind that I answered this already. First of all, thanks for testing out c302, it's highlighting some issues we've been un aware of.
The main issue is that the current c302 doesn't work on python >=3.11 (see here). This isn't c302 itself, but owmeta, which is a package used to extract metadata on the worm cells. This is unfortunately not actively updated anymore, and is not likely to work on py3.11 soon. c302 should in theory work fine without owmeta, but some code will have to be changed to not have it as an install requirement and catch cleanly when it's not found.

So your options are:

  1. create a virtual environment using conda or venv for py3.10, and everything should work better
  2. wait for us to update c302 to work without owmeta (a few weeks?)
  3. wait for owmeta to support py3.11 (a few months?)

Regarding your question on recording the neuron/muscle's response for different currents, see https://github.com/openworm/c302/blob/master/examples/parametersweep/README.md. This is the file to general that: https://github.com/openworm/c302/blob/master/examples/parametersweep/Sweep.py, but you'll need a working install of c302.

from c302.

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