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PaulMelloy avatar PaulMelloy commented on July 20, 2024 1

Hello, as requested the slim data has been coded in the script file R/slimming_PM_dat.R
and the output file saved to data/slim_PM_dat.csv
I did not add the fungicide timing variable as advised, we will do this in the Rmd file

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emdelponte avatar emdelponte commented on July 20, 2024

This looks fine, just need to create the fungicide timing variable later after loading the data. I have two suggestions to clean up the data even more.

  1. create a "trial" variable:
    dat %>% unite(trial, year, location, host_genotype, row_spacing.m, sep = "_", remove = F)

  2. clean up the fungicide levels to
    dat %>%
    filter(fungicide_ai %in% c("control", "tebuconazole", "propiconazole"))

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adamhsparks avatar adamhsparks commented on July 20, 2024

Yes, I was thinking to add those via the analysis script. This file would just provide the basic data we need to work from. But we can certainly add them to this file.

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adamhsparks avatar adamhsparks commented on July 20, 2024

Colnames don't have to be exactly that if you're using others already. But I think those should indicate the data we'd like.

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adamhsparks avatar adamhsparks commented on July 20, 2024

thanks, @PaulMelloy

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