PM_MB_updated.csv provenance about mungbean_pm HOT 6 CLOSED

The file should not be created by knitting the book. It is created through the markdown file in the folder DataWrangle (ExcludeBook_191115_PMMB_DataWrangling_PM.Rmd).
It has had some changes to it recently, so perhaps when knitting it seemed like changes were made.
I'll double-check that it is not altered in knitting a book

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After checking the 'updated' data file was last changed when the dataWrangle file was updated. Both files have the same commit message applied to them.
The reason I created this file was many changes were being made from multiple raw data files and to get around the volume of code and time needed to reformat the data every time it needs to be read in I created a new file PM_MB_updated.csv. This file is created after the data is wrangled from numerous raw data files and is when the AUDPC is calculated.
We can store this data file in the cache directory if that is the appropriate thing to do. I am still learning the github repository/project etiquette. :)

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Ok, so I didn't understand the provenance of it. However, the raw data should always be treated as read-only in the data directory. We shouldn't be overwriting any files in that directory no matter what the script or Rmd file is.

So if it's based on the raw data but is not raw data, then we need to move it over to cache.

Not a huge deal, but can save a lot of headache.

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Also, if you're using write.csv() and not write_csv() you'll probably want to not write row names with the file. That results in an extra column of numeric values.

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Are we done with this? Should it be closed?

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Yeah I think it is closed. I have amended the as per your advice.
It's much better

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