Comments (2)
from opentyper.
The "OpenTyper" perspective is part of the latest OpenChrom release although I am planing for a standalone release #21. Go to https://www.openchrom.net/download and follow the instructions at https://wiki.openchrom.net/index.php/OpenChrom_Installation However they look a bit outdated. If you are using Windows, we recommend http://www.7-zip.org for extracting the files.
I only have access to Bruker microFlex instrument so the following assumes you have one as well. Make some adjustments in the instrument settings
so that the whole spectrum gets loaded and not just a subset:
and enable the profile MS view, which won't be necessary in the next release with #26, but for now you have to check it:
Then choose the perspective
and there it is:
Currently more like a viewer to sort out low quality spectra:
You can export it to e.g. CSV files which is also configurable:
and then save it to disk:
You can't really do much data analysis, but that is on the agenda. For now I recommend the excellent http://sing.ei.uvigo.es/mass-up/ from @sing-group for further data processing.
from opentyper.
Related Issues (20)
- Heatmap / Gel View of Mass Spectra HOT 2
- Automatic check for mass shifts
- Spectra Comparison
- Method of identifying microorganisms HOT 1
- Continuous Integration HOT 2
- Verify brukerconverterflex HOT 2
- Trim empty lines from Mass Spectrum CSV export
- Update repository HOT 2
- Own .product file and standalone release HOT 2
- Static website HOT 1
- Matlab Peak List Files Converter
- mzXML data format for MALDI HOT 1
- Support for the Applied Biosystems Voyager DE STR MALDI-TOF MS HOT 2
- auto-detect profile mass spectra HOT 1
- Don't force microFlex users to click through large amounts of sub-directories HOT 1
- Support for SpectraBank .peaks lists
- FoodBIMS HOT 2
- SPECLUST HOT 2
- Mass labels on top of the peak
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from opentyper.