How can I add/install OpenTyper to Openchrom ??? about opentyper HOT 2 CLOSED

openchrom commented on August 23, 2024

How can I add/install OpenTyper to Openchrom ???

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Comments (2)

eselmeister commented on August 23, 2024

Hi Seb, Matthias will guide you through the necessary steps. Best, Philip Am 09.01.2018 um 12:11 schrieb Seb.:

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I'm new to this software and I don't understand how to install / launch / use OpenTyper in Openchrom so could you help me ??? Installation guidelines could be great — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#27>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAp6Tyf_FHFPa2ecSRgQs_yaDeRNYDPGks5tI0l_gaJpZM4RXqu7>.

-- ~~~~~~~~~~~~~~~~~~~~~~~~ OpenChrom - the open source alternative for chromatography / mass spectrometry Dr. Philip Wenig » Founder » [email protected] » http://www.openchrom.net ~~~~~~~~~~~~~~~~~~~~~~~~

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Mailaender commented on August 23, 2024

The "OpenTyper" perspective is part of the latest OpenChrom release although I am planing for a standalone release #21. Go to https://www.openchrom.net/download and follow the instructions at https://wiki.openchrom.net/index.php/OpenChrom_Installation However they look a bit outdated. If you are using Windows, we recommend http://www.7-zip.org for extracting the files.

I only have access to Bruker microFlex instrument so the following assumes you have one as well. Make some adjustments in the instrument settings

so that the whole spectrum gets loaded and not just a subset:

and enable the profile MS view, which won't be necessary in the next release with #26, but for now you have to check it:

Then choose the perspective

and there it is:

Currently more like a viewer to sort out low quality spectra:

You can export it to e.g. CSV files which is also configurable:

and then save it to disk:

You can't really do much data analysis, but that is on the agenda. For now I recommend the excellent http://sing.ei.uvigo.es/mass-up/ from @sing-group for further data processing.

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