Comments (6)
This will be a big change. I don't know how many ontologies will be affected. We will probably need to do a survey first.
For those that will be affected, do we have any recommendation for them? Anyway, they want to follow OBO foundry principles and become part of the initiative. If we reject them, I don't know if it is a big hit to their project. It may also hurt the OBO because these ontologies were generated before a formal policy is set up.
Also, we probably need a more formal policy on this with a written document and agreement by the foundry.
Oliver
From: Alan Ruttenberg [[email protected]]
Sent: Tuesday, June 10, 2014 2:58 PM
To: ontoden/ontobee
Subject: [ontobee] Unregistered OBO namespaces appear in ontobee (#15)
The only ontologies sanctioned to use the namespace
http;//purl.obolibrary.org/obo/xxx
are those where xxx are listed in an id tag
https://code.google.com/p/obo-registry/source/browse/trunk/metadata/ontologies.txt
ontobee should generate a 404 for any request that is not using a registered namespace.
Later we will likely put in technical mechanisms that prevent these from being redirected in the first place.
This is triggered by working on https://code.google.com/p/obo-foundry-operations-committee/issues/detail?id=137 and noticing that they use ids like ARG_xxxxxx
However I notice that ICO is also doing that. It should also not appear on ontobee until the namespace is registered.
—
Reply to this email directly or view it on GitHubhttps://github.com//issues/15.
Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues
from ontobee.
It's fine to do a survey, but the architecture of the web make clear that the domain name owner has authority on the URIs in its domain. Also, the OBO namespace policy and id policy are well documented and have been in place for a good amount of time. So perhaps rather than having a survey it would be better to give notice and assist with either having namespaces registered or changing URI to not use the the domain purl.obolibrary.org if groups don't want to do that.
As I mentioned, plans are underway, in any case, to address this issue upstream but there are some technical issues that need to be resolved. It is considered a bug that unregistered purls are redirected. In any case, I'd rather that we're all on the same page about solving the problem.
A first step might be to have a banner on pages with unauthorized namespaces explaining the issue, suggesting that users contact the ontology developer to have them register the namespace and explaining that unregistered purls will cease to work at some point.
Note this only applies to urls that are below http://purl.obolibrary.org/
from ontobee.
Oliver, we do have written documents on this policy. http://obofoundry.org/id-policy.shtml is the OBO foundry policy on registration and http://en.wikipedia.org/wiki/Domain_name among other resources describe how domain names work.
Regards,
Alan
from ontobee.
There seems a problem with the website:
http://www.berkeleybop.org/obo/id-policy.shtml
Oliver
From: Alan Ruttenberg [[email protected]]
Sent: Tuesday, June 10, 2014 3:31 PM
To: ontoden/ontobee
Cc: ontoden
Subject: Re: [ontobee] Unregistered OBO namespaces appear in ontobee (#15)
Oliver, we do have written documents on this policy. http://obofoundry.org/obo/id-policy.shtml is the OBO foundry policy on registration and http://en.wikipedia.org/wiki/Domain_name
Regards,
Alan
—
Reply to this email directly or view it on GitHubhttps://github.com//issues/15#issuecomment-45660455.
Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues
from ontobee.
I tried to fix the post. http://obofoundry.org/id-policy.shtml
On Tue, Jun 10, 2014 at 3:44 PM, ontoden [email protected] wrote:
There seems a problem with the website:
http://www.berkeleybop.org/obo/id-policy.shtmlOliver
From: Alan Ruttenberg [[email protected]]
Sent: Tuesday, June 10, 2014 3:31 PM
To: ontoden/ontobee
Cc: ontoden
Subject: Re: [ontobee] Unregistered OBO namespaces appear in ontobee (#15)Oliver, we do have written documents on this policy.
http://obofoundry.org/obo/id-policy.shtml is the OBO foundry policy on
registration and http://en.wikipedia.org/wiki/Domain_nameRegards,
Alan—
Reply to this email directly or view it on GitHub<
https://github.com/ontoden/ontobee/issues/15#issuecomment-45660455>.
Electronic Mail is not secure, may not be read every day, and should not
be used for urgent or sensitive issues—
Reply to this email directly or view it on GitHub
#15 (comment).
from ontobee.
from ontobee.
Related Issues (20)
- SEP Sample Processing and Separation Techniques Ontology not available in Ontobee HOT 1
- Ontofox Bug: Some ontologies not updating/importing HOT 7
- Expired certificates on ontobee.org ? HOT 2
- ontobee is currently down HOT 3
- Problem in visualization and browsing of ONS in ONTOBEE HOT 3
- Reload GENEPIO HOT 3
- Is DOID included in OntoBee? HOT 4
- The main page has "Drosophila Phenotype Ontology" listed as the title for FBcv HOT 1
- MS ontology not working in Ontobee HOT 3
- OCRe is not loading HOT 1
- The main http://www.ontobee.org is down? HOT 2
- 503 status code when trying to connect to https://sparql.hegroup.org/sparql
- Server is down again? HOT 2
- Schema changed, breaking our code HOT 12
- Reduce number of redirects from purl?
- [BUG] PECO links are broken
- [BUG] PO links are broken HOT 2
- [BUG] TO links are broken HOT 4
- server is "unreliable" - disappears for hours once or twice a week HOT 1
- ontobee is still down HOT 3
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from ontobee.