Comments (5)
Yeah. I think I commented about this earlier somewhere. The issue is that some of the bibtex stuff, maybe pybtex
, have extra dependencies on python26 like argparse or ordereddict. So the conda recipe fails to build for that platform.
from conda-recipes.
So we have already decided to deprecate py26. maybe you need to update
your repo?
On Nov 25, 2014 1:38 AM, "Robert T. McGibbon" [email protected]
wrote:
Yeah. I think I commented about this earlier somewhere. The issue is that
some of the bibtex stuff, maybe pybtex, have extra dependencies on
python26 like argparse or ordereddict. So the conda recipe fails to build
for that platform.—
Reply to this email directly or view it on GitHub
#49 (comment)
.
from conda-recipes.
I merged in @kyleabeauchamp's PR #48, and Jenkins is pointing toward the latest version.
It seems this failure occurs on osx only:
https://jenkins.choderalab.org/job/conda-omnia-release-osx/20/console
but not the linux vm, which fails for another reason:
https://jenkins.choderalab.org/job/conda-omnia-release-linux-vagrant/5/console
from conda-recipes.
The linux failure appears to be:
+ vagrant ssh --command 'rm -rf miniconda/conda-bld'
+ vagrant ssh --command 'cd conda-recipes ; python build-all.py'
+ [[ linux-gnu == \d\a\r\w\i\n* ]]
+ ./configure --prefix=/home/vagrant/miniconda/envs/_build --enable-shared --disable-fortran --enable-threads --enable-sse2 --enable-single
+ make
+ make install
libtool: install: warning: relinking `libfftw3f_threads.la'
+ /home/vagrant/miniconda/envs/_build/bin/python setup.py install
Traceback (most recent call last):
File "setup.py", line 1, in <module>
from setuptools import setup
ImportError: No module named setuptools
Command failed: /bin/bash -x -e /home/vagrant/conda-recipes/docopt/build.sh
Building conda packages on grid of python / numpy versions
This will take a while... (15 minutes or more)
conda build --output fftw3f
conda build --output docopt
Traceback (most recent call last):
File "build-all.py", line 21, in <module>
build('docopt')
File "build-all.py", line 14, in build
shell('conda build %s' % name)
File "build-all.py", line 5, in <lambda>
shell = lambda cmd: check_output(cmd, shell=True)
File "/home/vagrant/miniconda/lib/python2.7/subprocess.py", line 573, in check_output
raise CalledProcessError(retcode, cmd, output=output)
subprocess.CalledProcessError: Command 'conda build docopt' returned non-zero exit status 1
Build step 'Execute shell' marked build as failure
Finished: FAILURE
Not sure if that means there is an issue with the fftwf
recipe or the docopt
recipe.
from conda-recipes.
I would guess docopt, as I don't understand why fftwf would be calling setuptools.
Doesn't quite make sense, though, as setuptools is clearly listed as a prereq for build. Maybe adding it to run as well will help.
Regardless, the first step is to reproduce manually
from conda-recipes.
Related Issues (20)
- Standardize on AmberTools instead of AmberMini HOT 2
- omnia.md website is broken HOT 3
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