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Name: Omar I. ElAshkar

Type: User

Company: University of Florida

Bio: PhD Student in PMX #AI4drug

Hi there, Welcome to my Profile! 👋

I am Omar. Currently, I am pursuing a PhD in Pharmaceutical Sciences at the University of Florida 🐊.

Programming Languages I use the most 🧑‍💻

Frameworks I love to use

PyTorch, scikit-learn, MONAI

My research focus 🧪🔬

I’m currently working on empirical modeling methods, mainly on PK/PD, ML and medical imaging.

Previously I have worked on:

Genomic data analysis to investigate potential molecular and cellular activities for cancer and obesity
WSI histopathology pancreatic image segmentation and analysis
MRI Bone image segmentation
Developing clinical trial simulation tool for Duchene muscular dystrophy (DMD)

Omar I. ElAshkar's Projects

assemblerr

Quickly assemble pharmacometric models

bda_r_demos

Bayesian Data Analysis demos for R

bioinformaticsedx

Rmd source files for the HarvardX series PH525x

causal-inference-and-discovery-in-python

Causal Inference and Discovery in Python by Packt Publishing

cellsparse-api

Cellsparse API

cellsparse-core

Cellsparse

covid-19-shiny

dammmodel.jl

Visualisation, output and fitting of the DAMM model

dask-tutorial

NCAR Dask tutorial (Spring 2023)

deep-learning-workshop

dose-calculator

A practical dosage calculator

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

explainerdashboard

Quickly build Explainable AI dashboards that show the inner workings of so-called "blackbox" machine learning models.

fcmlcode

gem-modeling-for-dietary-effects

MSc Thesis Code

ggplotlyextra

giftr

:books: R Package to create LMS quizzes

hands-on-simulation-modeling-with-python

Hands-On Simulation Modeling with Python, published by Packt

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

metricsreloaded

monai

AI Toolkit for Healthcare Imaging

multiomics.ksbmb2022

This repo contains code associated with KSBMB 2022 conference

nmhelp

A mirror site of the official NONMEM help

nonmem

NONMEM VSCode Plugin

obmiti

obob.kscmb

Repo contains scripts of Ob/Ob GEM analysis presented at KSMCB.

omarashkar

omarashkar.github.io

org-download

Drag and drop images to Emacs org-mode

pkpdapp

A web application for modeling the distribution and effects of drugs.

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