nvladimus Goto Github PK

alpao-interface

Interface to ALPAO DM-97

arduinorotaryencoderpcb

A small PCB for denoising a rotary encoder with LED illuminated shaft

clearmap2

ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap

cncmicroscope-code

daospim

daoSPIM microscope project: software and hardware

grbl-mega

An open source, embedded, high performance g-code-parser and CNC milling controller written in optimized C that will run on an Arduino Mega2560

hanser-phase-retrieval

retrieve phase of high NA objective based on "Phase-retrieved pupil functions in wide-field fluorescence microscopy". Hanser BM1, Gustafsson MG, Agard DA, Sedat JW.

instrumental

Python-based instrumentation library from the Mabuchi Lab.

itk_sandbox

Registration and deconvolution of 3/4D microscopy images using simpleITK

kekse

Rapid GUI building for instrument control (PyQt5 based)

lens-testing

Code for optical lens testing

marlin

Optimized firmware for RepRap 3D printers based on the Arduino platform.

meta

For laying organizational groundwork

micro-manager

Microscope control and image acquisition integrated with ImageJ.

mirao-lv-driver

Mirao 52e deformable mirror driver (API) imported into LabView

miraocontrol

basic control of Mirao52e deformable mirror

nicolase

Open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy

npy2bdv

Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.

nvladimus.github.io

My personal webpage

openmicroscopy

Non-comprehensive list of projects and resources related to open microscopy.

openstage

Arduino-based microscope stage controller

opto

Python interface to Optotune focus-tunable lenses

pulse_counter

Arduino code for generating DC bias triggered by external device (e.g. camera). PCB design for adding generated DC bias to an input AO signal.

pymeasure

Scientific measurement library for instruments, experiments, and live-plotting

pyzwoefw

Python library for controlling the electronic filter wheel developed by ZWO

qudi

A modular laboratory experiment management suite.

rapidcell

Multiscale modeling of E.coli chemotaxis

ray_tracer

basic ray tracer

spherical_aberration

Ray tracing of spherical aberration in microscopy

sprinter

Firmware for RepRap printers and similar devices