nunoalexandrefaria Goto Github PK
Type: User
nunoalexandrefaria's Projects
abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
bactopia
A flexible pipeline for complete analysis of bacterial genomes
bakta
Rapid & standardized annotation of bacterial genomes & plasmids
cgview_comparison_tool
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
chewbbaca
BSR-Based Allele Calling Algorithm
hamronization
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
innuca
INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search
nanoseq
Nanopore demultiplexing, QC and alignment pipeline
patlas
Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
shovill
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
split_multi_fasta
Split multi fasta file into single fasta files
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