Comments (1)
Use other methods to complete the same operation
just use ice
from hic-pro.
Related Issues (20)
- HiC-Pro --help HOT 2
- how to index bam files after sorting by reads name ? HOT 1
- merge allValidPairs and convert to .hic HOT 1
- gensub: third argument treated as 1 HOT 3
- Can multiple nodes be set for parallel processing in HiC-Pro (Torque)? HOT 2
- hicpro2juicebox.sh: line 152: java: command not found HOT 1
- hicpro2juicebox.sh: allValidPairs.pre_juicebox_sorted does not exist or does not contain any reads HOT 1
- converting allvalidpairs to pairs HOT 13
- HiC-Pro not reporting fragment size in allValidPairs file
- From allvalidpairs to mcool
- HiC-Pro for ChIA-PET data analysis
- contact map in complete format instead of upper
- Bowtie2 alignment step1 ... Logs: logs/Control1/mapping_step1.log HOT 1
- hicpro2juicebox.sh not work for nextflow pipe https://github.com/nservant/nf-core-hic/tree/master
- Low Read Alignment in Initial Bowtie Step HOT 1
- make: *** [bowtie_pairing] Error 1
- line:303
- Polyploidy HOT 1
- Restriction fragments difference generated from HiC-Pro (digest_genome.py) and Juicer for Arima HOT 1
- Process data type HOT 2
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