nriddiford Goto Github PK

actinart

Development for the Actin Art project website

allelefreqs

bioinformatics_training

Some training material for the Bardin lab members

blast-example

A basic blast pipeline using nextflow

cigar_compare

cis-reg-binding-finder

An ongoing project to locate and score TF responsive elements in genome

cnvplotter

Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec

cv

A list of publications/presentations/posters etc

deconstructsigs

deconstructSigs

forkstaller

Simulate fork stalling events in a genome

gopher

Gene Ontology and Pheatmapper

investigating-structural-variation-in-cancer-genomes

My lab book for current project: Identifying structural variation in WGS data

k-mer-finder

Find n most frequent k-mers

mapped-ip-addresses

R code used to generate Fig1 in Riddiford (2017)

mutation_profiles

mutationprofiles

Extract and explore snv data

nf-core-lohcator

nf-lohcator

nriddiford.github.io

A website for the Actin Art project

perl-scripts

General usage Perl script

riddiford-and-schlosser-2016

Dissecting-the-pre-placodal-transcriptome-to-reveal-direct-targets-of-Six1-and-Eya1-in-cranial-placodes

riddiford_et_al_2020

scales

svbreaks

Analysis and plotting functions for structural variant breakpoint data

svmech

Predict mechanism underlying structural variants

svparser

Explore and filter structural variant calls from Lumpy and Delly VCF files

svsupport

A tool to find reads supporting/opposing structural variant breakpoints

textor

vcfparse

Parse VCF files to allow easy filtering and analysis

whatstat

A tool to parse and visualise your WhatsApp group chats