nolanlab Goto Github PK
Name: Garry P. Nolan Laboratory
Type: Organization
Location: Stanford University, Stanford CA
Name: Garry P. Nolan Laboratory
Type: Organization
Location: Stanford University, Stanford CA
bead-based normalization of mass cytometry data
VWorks plugin for controlling BioTek liquid handlers
Citrus Development Code
Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
A visual studio project to create MSI for CODEX uploader and segmentation JAR
A simple viewer for CODEX datasets developed using a python image analysis framework called napari.
Run CODEX apps on the web: driftcompensation, deconvolution, segmentation, clustering and viewing
Project to deploy the CODEX server on the left and right computers in the nolan lab.
Trims the codex stacks leaving a specified number of slices around the given plane
This tool is to help Codex users upgrade their processed Codex data from Nolan lab tiff or old format to the new image sequence format that is compatible to be used with MAV for analysis.
An ImageJ plugin to view and analyze CODEX images from the CODEXToolkit.
Script for backing up CyTOF data to Google cloud storage
R package for working with CyToF data
Cytoscape plugin for SPADE
Comprehensive comparison of dimensionality reduction data for single-cell data
various scripts and functions that can be useful when working with mass (or flow) cytometry data in Matlab
A reference map of the mouse Immune System
Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front"
A tool to design probes for the PLAYR technology
RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data
Memory efficient clustering in R for large datasets
Accessory algorithms and data structures for multivariate single-cell analysis. VorteX and CODEX projects use this library
scaffold
Scale-invariant debarcoding algorithm for CyTOF data
The SCONE algorithm
deconvolution of barcoded CyTOF data
SNAIL paper data
SPADE: Spanning Tree Progression of Density Normalized Events
A declarative, efficient, and flexible JavaScript library for building user interfaces.
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Bring data to life with SVG, Canvas and HTML. 📊📈🎉
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Some thing interesting about web. New door for the world.
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We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.