Comments (1)
In most tandem mass spectrometry experiments, the amino acid cysteine has a modification applied to it as part of the sample processing. This modification, called carbamidomethylation, adds 57.021 Da to the mass of cysteine. This annotation simply reflects that mass shift.
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Related Issues (20)
- ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() HOT 3
- Make Casanovo produce Skyline compatible output
- 9-Species Benchmark Set: Data Preprocessing Step? HOT 5
- Migrating PeptideMass, PeptideDecoder, and PeptideEncoder from depthcharge v0.2.3 to casanovo HOT 3
- Is there a way to know which spectras are ITMS instead of FTMS? HOT 3
- Numpy release 2.0.0 breaks depthcharge dependency HOT 2
- Use Fourier embeddings
- Add mzTab validator to github actions HOT 1
- Make Casanovo model compatible with torch.compile
- Designate a filename for the "best" model HOT 11
- PyTorch (GPU) not working on Win 11 box HOT 4
- ValueError upon unexpected scan title format HOT 7
- Eliminate the eval command HOT 4
- Greater than or equal to character ≥ causes logging error in end of run report.
- RuntimeError: CUDA error: the launch timed out and was terminated HOT 3
- Codecov Github Actions job fails in MacOS container.
- Make "psms" tuple used for output a named tuple HOT 1
- Some questions when I tried to train a new casanovo model from scratch... HOT 6
- Eliminate the `model_save_folder_path` config option
- The speed of the inference is very slow when using a model that I've trained myself from scratch. HOT 1
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