Comments (3)
oesteban
commented on June 5, 2024
We could talk briefly about this very soon with @chrisfilo . I'm having somewhat similar issues in mriqc, and we should understand all that nipype can do for us in this matter. Possibly more than we expect, so lets see this next Monday/Tuesday.
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berleant
commented on June 5, 2024
Did you meet/come up with any thoughts on this?
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chrisgorgo
commented on June 5, 2024
Closing in favour of #66
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Related Issues (20)
- recon-all randomly fails for the exact same data (fmriprep-docker) HOT 3
- fmriprep23.2 '--level minimal' fails with 'anat_to_template_Warped.nii.gz' not available HOT 3
- Flag to align Freesurfer T1w and fMRIPrep T1w spaces HOT 2
- Run Multiple Subjects in a Loop and fmriprep Picked the Wrong Subject's Jason File HOT 2
- Wrong output dimensions HOT 4
- Wrong fieldmap correction in 23.2.0 using opposite PE images HOT 9
- Problem during Node gen_avg - The xxx trait of a VolregOutputSpec instance must be a pathlike object or string HOT 3
- Add motion parameter units to confounds sidecar HOT 2
- File not found error - possibly related to template folder HOT 2
- Ignore all subjects except the requested ones in BIDSLayout initialization
- bold2target transforms applied in incorrect order to boldref, mask, t2star map HOT 3
- Ensure non-cached templates are fetched on workflow start HOT 3
- Error in selecting --output-spaces MNIPediatric:cohort-5:res-2 HOT 3
- Susceptibility distortion correction fails HOT 2
- Track sources with DatasetLinks and BIDS-URIs
- Multi-echo reportlet datasinks' source_file not defined in resampling mode HOT 2
- ERROR: Label BA1_exvivo does not exist in SUBJECTS_DIR fsaverage! The fsaverage link probably points to an older freesurfer version HOT 8
- Allow `--derivatives` to be named HOT 1
- Track immediate `Sources` when possible HOT 5
- fMRIprep not running
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