nioo-knaw Goto Github PK
Name: Netherlands Institute of Ecology (NIOO-KNAW)
Type: Organization
Bio: Netherlands Institute of Ecology (NIOO-KNAW)
Location: Wageningen, Netherlands
Blog: https://www.nioo.knaw.nl
Name: Netherlands Institute of Ecology (NIOO-KNAW)
Type: Organization
Bio: Netherlands Institute of Ecology (NIOO-KNAW)
Location: Wageningen, Netherlands
Blog: https://www.nioo.knaw.nl
BSAnalyser is a pipeline designed to benchmark multiple BS aligners and SNP callers from raw BS sequencing data input. It will align sequences using the chosen aligners and call SNPs using the chosen SNP calling tools for each aligner used.
modified clone from https://github.com/thomasvangurp/epiGBS. Added wrapper scripts and conda compatibility
This is the epiGBS2 snakemake pipeline as published in a preprint version.
pipeline for HFC calculations from ped and map file, including permutations
Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
This tutorial will guide you through the process of generating and reading a QC report.
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