ning-liang Goto Github PK

10x-scatac-2019

Publication Page for Satpathy*, Granja* et al 2019

996.icu

Repo for counting stars and contributing. Press F to pay respect to glorious developers.

atac-seq

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atacproc

ATAC-seq processing pipeline

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline.

atacseq-1

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

ataqv

A toolkit for QC and visualization of ATAC-seq results.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awesome_bioinformatics

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome_spatial_omics

tools and notes for spatial omics

awosome-bioinformatics

A curated list of resources for learning bioinformatics.

baidupcs-web

bioinf2019

bioinf525

ATAC-seq lab for BIOINF525

bioinfor_tutorial_2018

biopycourse

Python short course for graduates in biology and biochemistry

books

Collection of Programming, Databases, Linux & Tools Books

cheatsheets

RStudio Cheat Sheets

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

chraccr

Analyzing chromatin accessibility data in R

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

corrplot

Package corrplot is for visualizing a correlation matrix

dastk

Differential ATAC-seq toolkit

data-science-ipython-notebooks

Recently updated with 50 new notebooks! Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

dataviz

A book covering the fundamentals of data visualization.

deepmetabolism

DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing

dscatac_analysis_code

Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

fast-data-portals-for-scrnaseq-data