Comments (3)
region.signal_to_img_maps() does not handle this case properly (maps_img parameter), for example.
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I have a problem with this one. In fact, most of our functions (like apply_mask) only works on 4D data. This leads to some coding patterns like: masker.transform([img_3d])
. If consider 1 frame 4D images as 3D, then I break this pattern and we will not be able to transform 3D data anymore. I think we should decide where exactly we want to allow 3D images as input.
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This has been fixed.
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Related Issues (20)
- Homogenize location and naming of testing utilities
- [BUG] clean_img with sample_mask passed to signal.clean fails because output dimensions are not the same as the input HOT 2
- [MAINT] Use `np.random.default_rng` for rng fixture HOT 1
- nibabel minimal dependency should be bumped up HOT 4
- [BUG] Strange behavior in compute_contrast when using it for LSA HOT 15
- [ENH] Request for Inclusion of "KONG Networks" Option in Nilearn Function "nilearn.datasets.fetch_atlas_schaefer_2018()"" HOT 6
- explain or refactor why F contrasts are handled differently than t contrasts
- should plot_surf_roi raise when provided invalid data (ie not positive integers)? HOT 20
- [BUG] NiftiSpheresMasker - Combination of percent signal change normalization and high-pass filtering only outputs signals in incorrect range. HOT 8
- [DOC] Nilearn RRID should be mentioned in the doc
- [ENH] add bland-altman plots for image comparison
- [ENH] integrate `load_confounds` into `first_level_from_bids` HOT 9
- Tests for plotting functions should include dummy data with negative values HOT 2
- [DOC] experimental-plot-surface-image-and-maskers example does not render well
- plot_surf_roi should raise error when negative or floating-point values are passed HOT 9
- [DOC] Failing doc build on main due to examples failing HOT 3
- [DOC] GLM decoding does not specify what is being classified. HOT 9
- [ENH] support fitting first levels to numpy arrays directly, in addition to niimgs HOT 4
- [BUG] plots showing significant results from "outside" the brain HOT 11
- [BUG] NiftiLabelsMasker missing signal HOT 9
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