nickwilliamssanger Goto Github PK
Name: Nick Williams
Type: User
Nick Williams's Projects
annotatr
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
ascat
ASCAT copy number R package
caveman
SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib
cgp-methpipe
CGP implementation of Nextflow methylseq
cgpcavemanwrapper
Reference implementation of CGP workflow for CaVEMan SNV analysis
hdp
R pkg for Hierarchical Dirichlet Process
mpn_phylogenies_and_evolution
Code and documents for "Life histories of myeloproliferative neoplasm inferred from phylogenies"
rsimpop
rstudio_sanger_lsf_farm
bsub Rstudio server on Sanger LSF farm, with access to /lustre, to be accessed via web browser
rtreefit
Fit mutation rates and ultrametric trees to trees with known observed mutation count and calling sensitivity
telomerehunter-docker
Repository to generate docker image for telomerehunter
treemut
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