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nickmckay avatar nickmckay commented on August 17, 2024

OK, I think I found a solution for this, it looks like it can be installed from the command line with this line:
devtools::install_git("https://git.bioconductor.org/packages/pcaMethods")

@chrismheiser could you add this line to the instructions before the geoChronR install line?
Also, it looks like the R and RStudio versions are still swapped on the GeoChronR info page

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gavinsimpson avatar gavinsimpson commented on August 17, 2024

It would be better to provide instructions that require the user to install Bioconductor packages in the normal way via the code @chrismheiser shows - which is also "from the command line". You can't automate this, which is one of the issues with the mismatch between R and Bioconductor releases, so you have to install the Bioconductor packages first and then geoChronR and you might as well do that the official way with biocLite script.

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chrismheiser avatar chrismheiser commented on August 17, 2024

This is a GeoChronR issue, not a LiPD Utilities issue. Moving the issue over to GeoChronR repo.

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