nicholas-owen Goto Github PK

2024-07-01-ucl-online

academic_site

ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

autosomal-dna-converter

Conversion between the raw Autosomal DNA data from FTDNA, 23andMe, Ancestry and deCODEme formats.

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome-1

😎 Awesome lists about all kinds of interesting topics

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

awesome-open-research

A collection of open research resources; tools, datasets, publications

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

babs-rnaseq

RNASeq Best Practice Analysis

bam2x

extract information from bam (sequence alignment) files and generate tables for further analysis.

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbio_validations

Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

bionickomics

ckanext-harbour_theme

common-workflow-language

Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊

computer-science-notes-only-source-code-

This repo contains only source code for computer science course.

conference_2020

This repository holds the content for the NHS-R Community conference, November 2020. Plenary session and lightning talk material will be shared in the relevant folders, and workshop details are below

crb_omics_manuscript

Code for the crb2a multi omics manuscript

cryfa

A secure encryption tool for genomic data

dagdata

data-science-blogs

A curated list of data science blogs

datasciencecoursera

datawrapper

An open source data visualization platform helping everyone to create simple, correct and embeddable charts in minutes.

deeplearning-biology

A list of deep learning implementations in biology

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

desktopdeployr

A framework for deploying self-contained R-based applications to the desktop

fuma-circos-plot

Configs and descriptions of circos plots created on FUMA web application

general