nib-si Goto Github PK

alpine-miniconda-singularity

Singularity container with Alpine OS, and miniconda3 installed in /opt/miniconda.

armor

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

booldog

A Python package for analyses of Boolean and semi-qualitative Boolean networks.

cbmpy

CBMPy is a Python based platform for constraint based modelling and analysis.

circadian-lesion

ckn_netviz

A visual browser of the CKN network

ckn_viz

CKN network visualization app

dinar

Differential Network Analysis in R

geneid

geneID app

isa-tab-for-plant-phenotyping

ISA-Tab configuration for plant phenotyping

liftoff

An accurate GFF3/GTF lift over pipeline

multiomics-integration

Potato ‘omics data analysis pipelines

newt

A web application to visualize and edit pathway models

phasihunter

pisa-api

pisa-tree

pISA-tree: Standard project directory tree (ISA framework compliant)

pisa-tree-assay-types

Collection of pISA-tree assay types.

pisa-tst

pisar

R support for pISA-tree

potato_srna_analysis

small RNA analyses, S. tuberosum

promoter

Large scale promotor sequence extraction​ ​in R

pss_viz

Interactive search and visualization of the PSS model.

ptda

Book chapter data: RNA sequencing for transcriptomic studies to identify important genes/pathways for potato’s response to pathogens

seekr

R interface for SEEK API (connection to FAIRDOMHub)

sensorplantanalysis

Package for analysis of sensor plant data, based on microscopic images

skm-ckn

The Comprehensive Knowledge Network of SKM

skm-neo4j

skm-tools

Scripts and utilities for leveraging SKM resources

test

Testing github workflow

uji-omics-phd

Omics integration