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16s-data-processing-training

3dmodel_scripts

This repository contains the custom scripts used in the automated workflows hosted on the NIH 3D Print Exchange (3dprint.nih.gov).

3dpx_api

ace

Seminar materials for BCBB ACE Workshops

ace-2020

African Centers of Excellence (ACE) Training for 2020

ace-2021

African Centers of Excellence (ACE) Training for 2021

ace-2021-uganda-fall

African Centers of Excellence (ACE) Training for 2021

ace_2021_hwe

Course materials as part of the ACE bioinformatics course in Population Genetics & Genomics

ace_uganda_2021_rnaseq

Course materials as part of the ACE_Uganda bioinformatics course, Spring 2021

aims

AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below manuscript for in-depth application

asm-mining-microbiomes-2022

ASM Microbe 2022 Course Workshop Materials for CW06. Mining Microbiomes: Analysis of Complex Microbiome Studies Using only a Laptop and Free Web Tools

azure-mean-test

baseline

Reproducible workflows for the data analysis of "Baseline" project

bcbb-training-intro-to-deep-learning

Intro to Deep Learning Course Materials

bcbb-training-intro-to-machine-learning

Intro to Machine Learning with WEKA for non-programmers

bcbb_training_examples

bst-calculater

Shiny scripts for BST calculater

categorical-data-analysis

cloudwatcher

A tool for monitoring AWS CloudWatch metrics and logs

code-best-practices

computational.flow.cytometry

covid-19-autopsy-sas-code

covid-flu

This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Influenza vaccination reveals sex dimorphic imprints of prior mild COVID-19.

covid.word.embedding

covid19-time-resolved

This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, Andrew J. Martins, William W. Lau, Nicholas Rachmaninoff, ..., John S. Tsang. "Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19" Cell (2021), In press.

covid_vaccine_bcells

Code repository for the paper titled: Pre-vaccination and early B cell signatures of the antibody response to SARS-CoV-2 mRNA vaccine

data-science-with-r

dicom2stl

dsb

Normalize CITEseq Data

dsb_manuscript

Code to reproduce results from manuscript "Normalizing and denoising protein expression data from droplet-based single cell profiling"