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Name: Heath Patterson
Type: User
Bio: Director of Spatial Biology Bioinformatics, @aspect-analytics
Twitter: NHeathPatterson
Location: Madrid, Spain
Name: Heath Patterson
Type: User
Bio: Director of Spatial Biology Bioinformatics, @aspect-analytics
Twitter: NHeathPatterson
Location: Madrid, Spain
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Code and data accompanying Advanced Imaging Mass Spectrometry 2019 (AIMS.2019) R workshop
Interface to the Bioformats Java library
Scripts to prepare data submission to HuBMAP for VU BIOMIC's CODEX data
Functions I wrote for CardinalMSI (http://www.cardinalmsi.org) for imaging mass spectrometry analysis.
Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.
create and modify naming within bruker flexImaging .mis files with a simple GUI
Conversion between spatial transformations of various formats / parametrizations
Notes to get started with imsmicrolink & wsireg
HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.
An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
napari: a fast, interactive, multi-dimensional image viewer for python
attempting to visualization linear 2D elastix transformations using napari's canvas model
napari plugin for IMS - Microscopy registration through laser ablation marks.
Whole slide image registration through wsireg in napari.
Experimental implementation of images in Zarr files.
some random data
R Cardinal extension to perform automated registration of sequential 2D imaging mass spectrometry data to 3D
Code accompanying "Co-registration and analysis of multiple imaging mass spectrometry datasets targeting different analytes"
Code for data analysis with Cardinal using regToolboxMSRC
Code to support the registration Hackathon
Registration toolbox for microscopy images integrated in imaging mass spectrometry experiments
Simple imzML to OME-TIFF for HuBMAP data ingestion
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
multimodal whole slide image registration in a graph structure
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.