nhihin Goto Github PK

aespca

Code to reproduce Adaptive elastic-net sparse PCA for robust cross-species, cross-platform analysis of complex gene expression data in Alzheimer’s disease (Hin et al.)

bioinfo-notes

Small collection of useful bioinformatics analysis notes

bulk_rnaseq_workshop

Workshop tutorial for RNA-seq and differential gene expression analysis using R programming and Bioconductor packages.

clot_proteomics

Exploratory analysis of proteomics data.

gradient2lines

Given a particular gradient, randomly pick colours from the gradient and draw a series of lines.

ire

Code to reproduce analyses in Iron Responsive Element (IRE)-mediated responses to iron dyshomeostasis in Alzheimer’s disease (Hin et al.)

k97fszebrafishanalysis

Analysis of transcriptome and proteome data from K97fs zebrafish model of Alzheimer's disease.

mgi_index

nf-rnaseq-sagc

RNAseq quantification pipeline

nhihin

About me + CV

nhihin.github.io

Personal website/landing page

pricetracker

Automatic scraping and tracking of prices of products of interest (only supports Chemist Warehouse and Sephora so far)

processing-sketches

Learning basic object oriented programming with Processing

pseudoreplicationpaper

Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication in Single-Cell" study

q96k97

Analysis to reproduce RNA-seq analysis of the Q96K97 zebrafish dataset as described in Newman & Hin (2020), Mol. Brain.

sampledb

Store and manage samples in SQL database through shiny application.

sc-workflowr

Code for the analysis chapter of my PhD thesis looking at kidney organoid scRNA-seq data

scgpt

singularity-example

tidytuesday

Various TidyTuesday analyses from SAHMRI's R/TidyTuesday study group.

workshop-sysadmin

zebrafish-rnaseq

RNA-seq processing pipeline for zebrafish dataset using bash scripts and SLURM array jobs.