Comments (3)
This is due to an older version of specufex being installed.
Best to create a totally new conda environment and install the latest specufex.
Put the following into a file and name it "conda-env.yaml" or something like that:
name: spectest
channels:
- conda-forge
- defaults
dependencies:
- python=3.8
- numpy
- scipy
- h5py
- jupyter
- jupyterlab
- matplotlib
- pandas
- pytables
- pip
Then run
conda env create --file=conda-env.yml
conda activate spectest
pip install -e git+https://github.com/benholtzman/specufex.git
Then run the tests and see what happens.
A some point we need to have a mechanism for creating isolated python environments so we aren't always struggling with this! The cookiecutter template I made will do that, but I haven't adapted it to specufex yet.
from specufex_processing.
Ah, sorry about that.
from specufex_processing.
No reason to be sorry!
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Related Issues (17)
- batch running SpecUFEx, random choice replace default HOT 2
- Integrate energy calc into MCW HOT 1
- Save the non-normalized spectrograms in a file (for later analysis) HOT 1
- save the path info for the the channels as an attribute in HDF5 file HOT 1
- Add waveform resampling to 1_makeWaveforms
- Separate hmm from nmf in preprocessing workflow
- Random seed option
- Add the requirements for pip install HOT 2
- Sort the EB matrix by either waveform similarity or energy or ? HOT 1
- Redo tests for preprocessing HOT 4
- Processing design - user workflows
- Add SNR to energy and entropy calcs HOT 1
- Add energy/entropy to the catalog HOT 1
- fix the representative waveform HOT 2
- Add energy-cluster plots
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