Related Issues (20)
- Community build cache validity bug HOT 2
- Developer guide uses deprecated CLI option
- docs: document nextalign-like use-case HOT 1
- ENH(nextclade cli): nextclade dataset list: indicate whether clades can be assigned HOT 7
- nextclade run --output-columns-selection throws error for seqName and includes index even though I don't want index HOT 11
- Nextclade Web: Confusing unwanted dataset switching HOT 3
- Nextclade Web: consider rethinking dataset badges HOT 1
- Nextclade Web: don't store unnecessary dataset info in local storage
- [minor] Auspice dataset functionality: URL redirects don't update displayed metadata HOT 3
- Max marker setting even counts markers that are off
- Frameshift and insertion markers cannot be disabled/configured in contrast to all other markers
- Unfolding <details> in changelog in website jumbles things up
- Rename `master` to `main`
- How does one update Nextclade CLI? I cannot find any instructions on the Nextclade CLI page, only descriptions of various updates? HOT 1
- Bioconda workflow failed with push error due to insufficient permissions HOT 7
- SVG download for the Results table
- Default threads for webapp are set too high HOT 2
- Add coverage per CDS to output HOT 8
- List of mutational changes per clade HOT 2
- Can influenza H5 datasets be available for nextclade CLI HOT 3
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