Comments (4)
Nextclade web is purely client-side - there is no server (other than the static one serving the assets). So I don't think what you're requesting works.
Instead: you can just post the fastas wherever you want to store them and then pass that URL to Nextclade. For example, you could post it to www.transfer.sh and download from there, or do I misunderstand your requirements?
from nextclade.
Thank for rapid response. I understand now. Excellent feature!
Ben
from nextclade.
Do I understand it correctly that you thought you couldn't just include any URL but had to post the sequences to some Nextclade server first? Just trying to understand how you came up with the idea for wanting to POST to Nextclade. Or is there another use case you're thinking about?
from nextclade.
If you want to interact purely programatically with Nextclade, consider using the CLI: https://docs.nextstrain.org/projects/nextclade/en/stable/user/nextclade-cli.html#quick-example
Though there is no way to get a GUI this way, output is purely textfile based.
from nextclade.
Related Issues (20)
- Incorporation of enterovirus dataset into nextalde docker container HOT 1
- Include aligned sequences and translations in ndjson
- ENH(nextalign cli): show default values in --help usage statement HOT 4
- Maximum Sequence Limit? HOT 2
- Web: Grey scale coloring for region/country/divison if scale not predefined in reference tree HOT 5
- How to decide if the reversionSubstitutions are valid variants or not and whether to keep them? HOT 2
- Direct Auspice SVG Download
- ENH: enlarge Visualization when more nucleotides/Codons even if mutations not fall in striclty adjacent codons but close enough to need a whole view. HOT 2
- Updating certain parts of the JSON file output from Map to Array HOT 2
- linux-musl artefact gets slower rather than faster when parallelizing in contrast to gnu HOT 5
- Parsing PCR primers HOT 2
- how many SARS-COV-2 sequences can nextclade handle in a MSA file? HOT 8
- Is there any example for handling HIV data? HOT 2
- Web crash: The target <seqName> could not be identified in the dom HOT 2
- Show "browser not supported HOT 1
- Show "browser not supported" modal only once per session HOT 3
- if the qc.overallStatus of my sequences are mediocre, can we keep them for next step analysis? HOT 5
- web-based nextclade issue when using another reference HOT 8
- web(minor): when customizing dataset files, it always says "pasted sequences" even if the field is for tree HOT 2
- I upload 1490 sequences to nextclade, and upload to auspice.us, why it shows me 4255 sequences? HOT 2
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