Related Issues (20)
- CI fails due to change in Python 3.6 deprecation warning from cryptography HOT 1
- Windows: Snakemake arguments with file paths containing backslashes produce file not found errors
- ENH: Print docker image used at beginning of aws-batch jobs HOT 2
- When using `--aws-batch`, the `--image` argument is ignored HOT 2
- BUG: `nextstrain update conda` doesn't seem to update to latest available conda-base HOT 18
- Confusing log message "runtime updated" when nothing was changed HOT 3
- `nextstrain update singularity` throws error about OCI indexes with Singularity 2.6 and 3.5.3 HOT 13
- Add command to self-upgrade HOT 3
- Auto-trigger Docker and Conda runtime builds on CLI releases
- `Your request was too big` error on stock RSV repo build via aws-batch HOT 7
- [build] `--cpus` isn't passed to thru when using `--exec` HOT 5
- Read-only filesystem errors from Snakemake in Singularity runtime HOT 2
- Installation fails when there is a space in the path HOT 1
- Docker runner assumes the Docker Hub (docker.io) registry HOT 4
- ENH: Detect and warn user if their environment deviates from nextstrain-base HOT 1
- Pyright failures with 1.1.309
- `nextstrain update conda` in 7.0.0 can error with "Invalid version" HOT 13
- Improve runtime documentation HOT 1
- pyparsing 3.1.0 causing test failures in Markdown image inlining HOT 4
- [batch] ZIP archive of build dir is stored without compression HOT 1
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