Related Issues (20)
- BUG: Uncaught `ImportError: libssl.so.1.1: cannot open shared object file: No such file or directory` via mamba/Ubuntu HOT 7
- BUG: Bioconda installed cli asks for upgrade via pip, it shouldn't HOT 4
- ENH: Link to relevant PRs in changelog HOT 2
- BUG(update): failed to register layer: sync /var/lib/docker/image/overlay2/layerdb/tmp/write-set-226670863/diff: input/output error HOT 4
- ENH: Use brotli compression by default if possible for nextstrain.org requests HOT 1
- [batch] exclude directories for upload HOT 9
- [setup] Docker runtime support HOT 1
- RFD: `remote upload`'s use of filenames HOT 8
- DOC: Mention disk space requirements for managed conda-runtime and docker HOT 1
- ENH: Compress batch job results using `.tar.zst` instead of `.zip` for 10x or more better compression ratio HOT 7
- ENH: Output commit hash of the workflow repo used when using repo actions to submit HOT 2
- ENH: Add `nextstrain update --all` (or `all`) command or support multiple arguments HOT 1
- [shell] shell-history does not exist for Docker HOT 4
- Nexstrain CLI standalone installation fails on EC2 Amazon Linux 2 HOT 5
- `nextstrain remote` treats Groups names as case sensitive though nextstrain.org does not
- `nextstrain view` error message with standalone CLI HOT 17
- CI fails due to change in Python 3.6 deprecation warning from cryptography HOT 1
- Windows: Snakemake arguments with file paths containing backslashes produce file not found errors
- ENH: Print docker image used at beginning of aws-batch jobs HOT 2
- When using `--aws-batch`, the `--image` argument is ignored HOT 2
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