Comments (5)
So this is from the 'need-curating.txt' file, correct? So you can modify these entries to something that would pass, i.e.
#Name Original Description Cleaned Description Error-message
CTS2 Glycoside hydrolase protein Cts2p Product defline failed funannotate checks
MUC21 cell surface associated mucin 21 Muc21p Product defline failed funannotate checks
SLC3A1 amino acid transport protein Slc3a1p Product defline failed funannotate checks
And then these curated models can get passed back to funannotate annotate
funannotate annotate -i folder --fix need-curating.txt
Any names/products that are not in the Genes2Products database then show up in the .new-names.passed.txt
file in the annotate_results
folder. That text file can be incorporated into the Genes2Products database by running the script in the forked Gene2Products repository. The resulting text file ncbi_cleaned_gene_products.txt
can then be submitted as a PR.
update-gene2product.py Gene2Products.new-names-passed.txt
from gene2product.
This seems like it taken care of. it is ~4 years old issue I think we moved ahead in this time
from gene2product.
Related Issues (6)
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from gene2product.