netneurolab Goto Github PK

.github

Lab-wide GitHub community documents

abagen

A toolbox for working with Allen Human Brain Atlas microarray expression data

bazinet_assortativity

Code supporting Bazinet et al., 2023, "Assortative mixing in micro-architecturally annotated brain connectomes" (Nature Communications))

bazinet_multiscale

Code and documentation supporting Bazinet et al., 2020, "Multiscale communication in cortico-cortical networks"

conn2res

A reservoir computing toolbox for neuroscientists

farahani_als

Network spreading and local biological vulnerability in amyotrophic lateral sclerosis

hansen_brainstemfc

Data and code supporting Hansen et al., 2023 bioRxiv "Integrating brainstem and cortical functional architectures"

hansen_crossdisorder_vulnerability

Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disorder cortical abnormalities"

hansen_gene-receptor

Data and code in support of Hansen et al., 2022 "Correspondence between gene expression and neurotransmitter receptor and transporter density in the human brain", NeuroImage

hansen_genescognition

Code supporting Hansen et al., 2021 "Mapping gene transcription and neurocognition across human neocortex".

hansen_many_networks

Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health and disease"

hansen_receptors

Data and code supporting Hansen et al., 2022 "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"

ipn-summer-school

liu_fc-pyspi

liu_meg-scfc

luppi-neurosynth-control

Code for Luppi et al (2024) Nature Biomedical Engineering

markello_neuromaps

markello_ppmisnf

Code supporting the recent preprint Markello et al., 2020

markello_spatialnulls

Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)

markello_transcriptome

Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)

marmoset_connectome

milisav_strength_nulls

Data and code supporting Milisav et al., 2024 "A simulated annealing algorithm for randomizing weighted networks"

netneurolab.github.io

Network Neuroscience Lab Website

netneurotools

Useful tools from the Network Neuroscience Lab

neuromaps

A toolbox for comparing brain maps

nnlab-intro-to-ds

pypyls

A Python implementation of Partial Least Squares (PLS) decomposition

shafiei_megdynamics

Code supporting Shafiei et al., 2023 "Neurophysiological signatures of cortical micro-architecture".

shafiei_megfmrimapping

Code supporting Shafiei et al., 2022 "Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal cortex".

suarez_connectometaxonomy