Binary masks for svs files about deeppath HOT 3 OPEN

Hi -

The only reason why it's not implemented for svs is because we never needed it.

Yes, you should just add mask.jpg and it should work.

I don't have time to properly integrate it to the code right now, but this particular case, if you just replace line 217 with
mask, xml_valid, Img_Fact = self.jpg_mask_read(xmldir)
It should hopefully work with svs images too (but then will not work for xml, so just change it for this particular case if you're in a hurry).

Best,
Nicolas

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Hi,

Thanks for the quick answer. Unfortunately, I am getting errors in the main function, concretely i'm getting the error:
No xml file found for slide Sample1.svs (expected: Sample1.xml). Directory or xml file does not exist from line 806.
I tried to add if (ImgExtension == ".jpg") | (ImgExtension == ".dcm") | (ImgExtension == ".svs"): in line 796 and I didn't get the error but I am not getting tiles.

Any idea how to solve it?
Thanks!

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Hmhm.... what's the content of the output log file then?...
Also, how are the masked? I think we expect them to be 8 bits with '0' for background and '255' for ROI.

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