nci-cgr Goto Github PK
Name: NCI-Cancer Genomics Research Lab/FNLCR
Type: Organization
Location: Rockville, MD
Blog: https://dceg.cancer.gov/about/organization/programs-hgp/cgr
Name: NCI-Cancer Genomics Research Lab/FNLCR
Type: Organization
Location: Rockville, MD
Blog: https://dceg.cancer.gov/about/organization/programs-hgp/cgr
Annotate plco-analysis intermediate files with frequency data
Use linker file to map chr:pos to rsID labels, for plco-analysis
Automated Processing of Telomere qPCR Data
Code for calling de novo mutations in Chernobyl trios.
merge results of SAIGE categorical runs into consensus results
CGR conda channel
cookiecutter template for autotools-powered C++ software package, with various quirks mixed in
COVNET GWAS pipeline developement
Filter minimac4 imputed data by Rsq within frequency bins
Apply results of dynamic_r2 to remove failed variants
A structural variation pipeline for short-read sequencing - modified to run on HPC
Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
microRNA-seq workflow utilizing STAR to generate a Sample-Gene read count matrix
GenCompass: Germline Ensemble Calling of Mutations with Parabricks Accelerated Software Suite
The CGR GWAS QC processing workflow.
Fake test data sets for the GwasQcPipeline.
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