naumenko-sa Goto Github PK
Name: Serhiy Naumenko
Type: User
Name: Serhiy Naumenko
Type: User
WDL that runs Annovar and a filtering R Script on the output of Mutect2
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
utils functions for exome coverage plots as quality controls
A community menagarie of automated variant validations using bcbio and the Common Workflow Language
Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
R package for bcbio RNA-seq analysis.
Conda recipes for the bioconda channel.
a bucket of bioinformatics scripts
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
excel report generation using data from bcbio variant2 germline pipeline
clinical reseach genome scripts
transcriptome analysis scripts (historically clinical research transcriptome)
ALS implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair
Toolkit for benchmarking fusion transcript predictions
a lightweight db framework for disease and population genetics.
prioritize effects of variant annotations from VEP, SnpEff, et al.
Compilation of rmarkdown templates for bioinformatics analysis
Detect HIV Drug Resitant Mutations using amplicon sequencing data
Tool to easily start up an IPython cluster on different schedulers.
recipes that save time
A conda-smithy repository for mamba.
R-based helper scripts to generate XML files and modifications to NF configuration files for ICAv2 compatiblity
Precision HLA typing from next-generation sequencing data
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.