Comments (5)
Should I go back to the original idea of trans3d()
?
from nat.flybrains.
Temporarily fixed in bf86f3b by switching to trans()
until a better name is invented.
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I think we might need to look at a different architecture. To my mind your template brain objects are quite close to a reg
argument, so if one was doing:
xform(neuron, reg=IS2)
xform(neuron, reg=c(IS2, FCWB))
# NB mirror currently has a warp not a reg argument, because of how we have separated
# the flipping and nonrigid components
mirror(neuron, reg=IS2)
that would make quite a bit of sense to me. One might then need a method like as.reg
that converted them to a registration object. Right now we only have cmtkreg
objects, but maybe it would be a good idea to have a more generic reg
base class. But perhaps that is a separate issue – it would need a bit more effort since figuring out just what kind of reg object we had might require the same kind of registry approach implemented in fileformats
. Since we are presently only using cmtk registrations for anything serious, we could just add a as.cmtkreg.TemplateBrain
method.
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See also #6.
from nat.flybrains.
Fixed in cd76438 by changing to xform_brain()
and mirror_brain()
.
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Related Issues (20)
- Add VNCIS1 surface HOT 1
- Should we add the other Drosophilid registrations and surfaces directly to this package? HOT 2
- add template objects for all brains in the study
- add zenodo DOIs for all template objects
- add DOI and sex information to help for each template brain HOT 1
- xform_brain should not require an explicit target specification for image data
- xform_brain should have an option for an additional registrations
- Problem downloading jefferislab registrations on Windows HOT 1
- Missing template brains HOT 4
- JFRC2013 template brain HOT 5
- IS2NP.surf has some malformed volumes
- JFRC2013 surface is inside out HOT 1
- Change IVLP -> WED HOT 1
- Add Neuropil_LPS.nrrd templatebrain object HOT 2
- Incorrect DOI for D. simulans brain
- Add JRC2018U temblate brain HOT 11
- Add JRCVNC2018U (aka JRC2018_VNC_UNISEX_4iso) template HOT 3
- Add JRC2018 templates of different resolution HOT 1
- Fail to install natverse HOT 3
- isuuses in download_registrations and loss of JRCFIB2018F and JRCFIB2018Fraw HOT 5
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