Comments (15)
arthaud
commented on August 23, 2024
Hi @kimwalisch,
IKOS compiles without problem on my laptop, but I'm using macOS High Sierra.
I see that you got a few errors and warnings, let's check them one by one:
/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'python_requires'
warnings.warn(msg)
error in virtualenv setup command: 'extras_require' must be a dictionary whose values are strings or lists of strings containing valid project/version requirement specifiers.
If reporting this issue please do so at (not Homebrew/brew or Homebrew/core):
https://github.com/nasa-sw-vnv/homebrew-core/issues
This is a python warning raised by a homebrew command. I think this has nothing to do with IKOS.
Please make sure homebrew is up-to-date.
I tried to google the warning and it looks like pip/setuptools/virtualenv might be out of date on your system, which is very suspicious.
/usr/local/Homebrew/Library/Homebrew/utils/github.rb:245:in `raise_api_error': GitHub Must specify two-factor authentication OTP code.:The GitHub credentials in the macOS keychain may be invalid. (GitHub::AuthenticationFailedError)
Clear them with:
printf "protocol=https\nhost=github.com\n" | git credential-osxkeychain erase
Or create a personal access token:
https://github.com/settings/tokens/new?scopes=gist,public_repo&description=Homebrew
echo 'export HOMEBREW_GITHUB_API_TOKEN=your_token_here' >> ~/.bash_profile
from /usr/local/Homebrew/Library/Homebrew/utils/github.rb:206:in `open_api'
from /usr/local/Homebrew/Library/Homebrew/utils/github.rb:324:in `search'
from /usr/local/Homebrew/Library/Homebrew/utils/github.rb:257:in `search_issues'
from /usr/local/Homebrew/Library/Homebrew/utils/github.rb:270:in `issues_for_formula'
from /usr/local/Homebrew/Library/Homebrew/exceptions.rb:372:in `fetch_issues'
from /usr/local/Homebrew/Library/Homebrew/exceptions.rb:368:in `issues'
from /usr/local/Homebrew/Library/Homebrew/exceptions.rb:422:in `dump'
from /usr/local/Homebrew/Library/Homebrew/brew.rb:127:in `rescue in <main>'
from /usr/local/Homebrew/Library/Homebrew/brew.rb:17:in `<main>'
It looks like homebrew cannot clone or download a resource from Github. You might have invalid Github credentials in your keychain. Personally, I define the HOMEBREW_GITHUB_API_TOKEN environment variable, see https://stackoverflow.com/questions/20130681/setting-github-api-token-for-homebrew
$ CXX=/usr/local/opt/llvm@7/bin/clang++ CC=/usr/local/opt/llvm@7/bin/clang cmake .. -DLLVM_CONFIG_EXECUTABLE="$(brew --prefix)/opt/llvm@7/bin/llvm-config"
Why are you trying to compile with clang 7? You should probably let cmake find your default compiler, Apple Clang.
Try to remove CXX= and CC= but keep -DLLVM_CONFIG_EXECUTABLE=, that's necessary.
[ 46%] Building CXX object analyzer/CMakeFiles/ikos-analyzer.dir/src/analysis/memory_location.cpp.o
/Users/kim/Downloads/ikos-master/analyzer/src/analysis/call_context.cpp:60:16: error: no member named 'try_emplace' in 'llvm::DenseMap<std::__1::pair<ikos::analyzer::CallContext *,
ikos::ar::CallBase *>, std::__1::unique_ptr<ikos::analyzer::CallContext, std::__1::default_delete<ikos::analyzer::CallContext> >,
llvm::DenseMapInfo<std::__1::pair<ikos::analyzer::CallContext *, ikos::ar::CallBase *> > >'
this->_map.try_emplace({parent, call},
~~~~~~~~~~ ^
1 error generated.
make[2]: *** [analyzer/CMakeFiles/ikos-analyzer.dir/src/analysis/call_context.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from /Users/kim/Downloads/ikos-master/analyzer/src/analysis/memory_location.cpp:47:
In file included from /Users/kim/Downloads/ikos-master/analyzer/include/ikos/analyzer/util/source_location.hpp:50:
In file included from /Users/kim/Downloads/ikos-master/frontend/llvm/include/ikos/frontend/llvm/import/source_location.hpp:50:
In file included from /usr/local/Cellar/llvm/7.0.0_1/include/llvm/IR/DebugInfoMetadata.h:26:
In file included from /usr/local/Cellar/llvm/7.0.0_1/include/llvm/BinaryFormat/Dwarf.h:28:
/usr/local/Cellar/llvm/7.0.0_1/include/llvm/Support/FormatVariadicDetails.h:66:20: error: no template named 'SameType'
static char test(SameType<Signature_format, &U::format> *);
^
In file included from /Users/kim/Downloads/ikos-master/analyzer/src/analysis/memory_location.cpp:47:
In file included from /Users/kim/Downloads/ikos-master/analyzer/include/ikos/analyzer/util/source_location.hpp:50:
In file included from /Users/kim/Downloads/ikos-master/frontend/llvm/include/ikos/frontend/llvm/import/source_location.hpp:50:
/usr/local/Cellar/llvm/7.0.0_1/include/llvm/IR/DebugInfoMetadata.h:72:9: error: unknown type name 'Metadata'
const Metadata *MD = nullptr;
^
/usr/local/Cellar/llvm/7.0.0_1/include/llvm/IR/DebugInfoMetadata.h:79:33: error: unknown type name 'Metadata'
explicit TypedDINodeRef(const Metadata *MD) : MD(MD) {
^
/usr/local/Cellar/llvm/7.0.0_1/include/llvm/IR/DebugInfoMetadata.h:90:12: error: unknown type name 'Metadata'
operator Metadata *() const { return const_cast<Metadata *>(MD); }
^
/usr/local/Cellar/llvm/7.0.0_1/include/llvm/IR/DebugInfoMetadata.h:98:34: error: unknown type name 'DINode'; did you mean 'MDNode'?
using DINodeRef = TypedDINodeRef<DINode>;
^
/Library/Frameworks/Mono.framework/Headers/llvm/IR/Metadata.h:126:7: note: 'MDNode' declared here
class MDNode : public Value, public FoldingSetNode {
^
In file included from /Users/kim/Downloads/ikos-master/analyzer/src/analysis/memory_location.cpp:47:
In file included from /Users/kim/Downloads/ikos-master/analyzer/include/ikos/analyzer/util/source_location.hpp:50:
In file included from /Users/kim/Downloads/ikos-master/frontend/llvm/include/ikos/frontend/llvm/import/source_location.hpp:50:
/usr/local/Cellar/llvm/7.0.0_1/include/llvm/IR/DebugInfoMetadata.h:99:35: error: use of undeclared identifier 'DIScope'
using DIScopeRef = TypedDINodeRef<DIScope>;
This is weird. Those are errors in llvm that I have never seen before.
from ikos.
kimwalisch
commented on August 23, 2024
This is a python warning raised by a homebrew command. I think this has nothing to do with IKOS.
Please make sure homebrew is up-to-date.
I tried to google the warning and it looks like pip/setuptools/virtualenv might be out of date on your system, which is very suspicious.
I have updated setuptools and virtualenv on GitHub and set my GitHub API token but the installation using brew installstill fails. Note that I already upgraded brew to the latest version before as described in your installation instructions.
pip install --upgrade setuptools --user
pip install --upgrade virtualenv --user
export HOMEBREW_GITHUB_API_TOKEN=XXX
brew install nasa-sw-vnv/core/ikos
==> Installing ikos from nasa-sw-vnv/core
==> Downloading https://github.com/nasa-sw-vnv/ikos/releases/download/v2.1/ikos-2.1.tar.gz
Already downloaded: /Users/kim/Library/Caches/Homebrew/downloads/dad01cb7251bcbeb8345d543aa960a47f31758f2ea6a65cf2d43bf0aa1210f09--ikos-2.1.tar.gz
==> Downloading https://files.pythonhosted.org/packages/4e/8b/75469c270ac544265f0020aa7c4ea925c5284b23e445cf3aa8b99f662690/virtualenv-16.1.0.tar.g
Already downloaded: /Users/kim/Library/Caches/Homebrew/downloads/bda8bcde19a275fd9c84a7ec957593976e90dfd0e461a87f5698f1d2286c0197--virtualenv-16.1.0.tar.gz
==> python -c import setuptools... --no-user-cfg install --prefix=/private/tmp/ikos--homebrew-virtualenv-20181213-5640-1ghpl3t/target --install-sc
Last 15 lines from /Users/kim/Library/Logs/Homebrew/ikos/01.python:
-c
import setuptools, tokenize
__file__ = 'setup.py'
exec(compile(getattr(tokenize, 'open', open)(__file__).read()
.replace('\r\n', '\n'), __file__, 'exec'))
--no-user-cfg
install
--prefix=/private/tmp/ikos--homebrew-virtualenv-20181213-5640-1ghpl3t/target
--install-scripts=/private/tmp/ikos--homebrew-virtualenv-20181213-5640-1ghpl3t/target/bin
--single-version-externally-managed
--record=installed.txt
/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'python_requires'
warnings.warn(msg)
error in virtualenv setup command: 'extras_require' must be a dictionary whose values are strings or lists of strings containing valid project/version requirement specifiers.
If reporting this issue please do so at (not Homebrew/brew or Homebrew/core):
https://github.com/nasa-sw-vnv/homebrew-core/issuesfrom ikos.
kimwalisch
commented on August 23, 2024
I have now successfully compiled ikos on Ubuntu 18.10 x64 using Clang 7 :-)
But I first got a linker error:
CXX=clang++ CC=clang cmake .. -DLLVM_CONFIG_EXECUTABLE="/home/xxx/Downloads/clang+llvm-7.0.0-x86_64-linux-gnu-ubuntu-16.04/bin/llvm-config"
make -j4
[ 36%] Building CXX object frontend/llvm/CMakeFiles/ikos-pp.dir/src/ikos_pp.cpp.o
[ 36%] Building CXX object frontend/llvm/CMakeFiles/ikos-llvm-to-ar.dir/src/import/source_location.cpp.o
[ 38%] Building CXX object frontend/llvm/CMakeFiles/ikos-llvm-to-ar.dir/src/import/type.cpp.o
[ 38%] Linking CXX static library libikos-ar.a
[ 38%] Built target ikos-ar
[ 38%] Linking CXX executable ikos-pp
CMakeFiles/ikos-pp.dir/src/ikos_pp.cpp.o:(.data.rel.ro._ZTIN4llvm2cl15OptionValueCopyINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE[_ZTIN4llvm2cl15OptionValueCopyINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE]+0x10): undefined reference to `typeinfo for llvm::cl::GenericOptionValue'
CMakeFiles/ikos-pp.dir/src/ikos_pp.cpp.o:(.data.rel.ro._ZTIN4llvm2cl4listINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEbNS0_6parserIS7_EEEE[_ZTIN4llvm2cl4listINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEbNS0_6parserIS7_EEEE]+0x18): undefined reference to `typeinfo for llvm::cl::Option'
CMakeFiles/ikos-pp.dir/src/ikos_pp.cpp.o:(.data.rel.ro._ZTIN4llvm2cl3optI12OptLevelTypeLb0ENS0_6parserIS2_EEEE[_ZTIN4llvm2cl3optI12OptLevelTypeLb0ENS0_6parserIS2_EEEE]+0x18): undefined reference to `typeinfo for llvm::cl::Option'
CMakeFiles/ikos-pp.dir/src/ikos_pp.cpp.o:(.data.rel.ro._ZTIN4llvm2cl6parserI12OptLevelTypeEE[_ZTIN4llvm2cl6parserI12OptLevelTypeEE]+0x10): undefined reference to `typeinfo for llvm::cl::generic_parser_base'
CMakeFiles/ikos-pp.dir/src/ikos_pp.cpp.o:(.data.rel.ro._ZTIN4llvm2cl15OptionValueCopyI12OptLevelTypeEE[_ZTIN4llvm2cl15OptionValueCopyI12OptLevelTypeEE]+0x10): undefined reference to `typeinfo for llvm::cl::GenericOptionValue'
CMakeFiles/ikos-pp.dir/src/ikos_pp.cpp.o:(.data.rel.ro._ZTIN4llvm2cl4listIPKNS_8PassInfoEbNS_14PassNameParserEEE[_ZTIN4llvm2cl4listIPKNS_8PassInfoEbNS_14PassNameParserEEE]+0x18): undefined reference to `typeinfo for llvm::cl::Option'
CMakeFiles/ikos-pp.dir/src/ikos_pp.cpp.o:(.data.rel.ro._ZTIN4llvm2cl15OptionValueCopyIbEE[_ZTIN4llvm2cl15OptionValueCopyIbEE]+0x10): undefined reference to `typeinfo for llvm::cl::GenericOptionValue'
libikos-pp.a(lower_cst_expr.cpp.o):(.data.rel.ro._ZTIN12_GLOBAL__N_116LowerCstExprPassE+0x10): undefined reference to `typeinfo for llvm::FunctionPass'
libikos-pp.a(lower_select.cpp.o):(.data.rel.ro._ZTIN12_GLOBAL__N_115LowerSelectPassE+0x10): undefined reference to `typeinfo for llvm::FunctionPass'
libikos-pp.a(mark_internal_inline.cpp.o):(.data.rel.ro._ZTIN12_GLOBAL__N_122MarkInternalInlinePassE+0x10): undefined reference to `typeinfo for llvm::ModulePass'
libikos-pp.a(mark_no_return_function.cpp.o):(.data.rel.ro._ZTIN12_GLOBAL__N_124MarkNoReturnFunctionPassE+0x10): undefined reference to `typeinfo for llvm::ModulePass'
libikos-pp.a(name_values.cpp.o):(.data.rel.ro._ZTIN12_GLOBAL__N_114NameValuesPassE+0x10): undefined reference to `typeinfo for llvm::ModulePass'
libikos-pp.a(remove_printf_calls.cpp.o):(.data.rel.ro._ZTIN12_GLOBAL__N_121RemovePrintfCallsPassE+0x10): undefined reference to `typeinfo for llvm::FunctionPass'
libikos-pp.a(remove_unreachable_blocks.cpp.o):(.data.rel.ro._ZTIN12_GLOBAL__N_127RemoveUnreachableBlocksPassE+0x10): undefined reference to `typeinfo for llvm::FunctionPass'
[ 38%] Linking CXX static library libikos-llvm-to-ar.a
clang-7: error: linker command failed with exit code 1 (use -v to see invocation)
frontend/llvm/CMakeFiles/ikos-pp.dir/build.make:134: recipe for target 'frontend/llvm/ikos-pp' failed
make[2]: *** [frontend/llvm/ikos-pp] Error 1
CMakeFiles/Makefile2:1820: recipe for target 'frontend/llvm/CMakeFiles/ikos-pp.dir/all' failed
make[1]: *** [frontend/llvm/CMakeFiles/ikos-pp.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 38%] Built target ikos-llvm-to-ar
Makefile:140: recipe for target 'all' failed
make: *** [all] Error 2I was able to fix that linker error by adding -DCMAKE_CXX_FLAGS="-fno-rtti":
CXX=clang++ CC=clang cmake .. -DCMAKE_CXX_FLAGS="-fno-rtti" -DLLVM_CONFIG_EXECUTABLE="/home/kim/Downloads/clang+llvm-7.0.0-x86_64-linux-gnu-ubuntu-16.04/bin/llvm-config"
make -j4
...from ikos.
kimwalisch
commented on August 23, 2024
Unfortunately none of my projects could be analysed using ikos:
# https://github.com/kimwalisch/primesieve
$ ikos-scan cmake .. -DBUILD_SHARED_LIBS=OFF
$ ikos-scan make
...
Analyze primesieve? [Y/n] Y
[*] Running ikos primesieve.bc -o primesieve.db
[*] Running ikos preprocessor
[*] Running ikos analyzer
[*] Translating LLVM bitcode to AR
ikos-analyzer: /tmp/ikos-eJchin/primesieve.pp.bc: error: unexpected null pointer in llvm::DICompositeType with DW_TAG_structure_type or DW_TAG_class_type tag
ikos: error: a run-time error occured# https://github.com/kimwalisch/libpopcnt
$ ikos-scan cmake ..
$ ikos-scan make
...
Analyze benchmark? [Y/n] Y
[*] Running ikos benchmark.bc -o benchmark.db
[*] Running ikos preprocessor
[*] Running ikos analyzer
[*] Translating LLVM bitcode to AR
ikos-analyzer: /tmp/ikos-p_Q2Kq/benchmark.pp.bc: error: unsupported intrinsic function @llvm.x86.avx2.pslli.q
ikos: error: a run-time error occuredfrom ikos.
arthaud
commented on August 23, 2024
For the issue with homebrew, see NASA-SW-VnV/homebrew-core#1
I am investigating the errors with primesieve and libpopcnt. Please give me time.
from ikos.
arthaud
commented on August 23, 2024
I fixed a few bugs (see de14a54 and b0c2048).
Could you try again? Please open separate issues for each different error, thanks.
from ikos.
kimwalisch
commented on August 23, 2024
I have now rebuilt ikos from scratch on Ubuntu 18.04 x64 and clang-7 using your latest code. The good news is that the linker error from Ubuntu I reported earlier has gone away (it was caused by myself by having installed incompatible packages).
Unfortunately ikos still fails to analyse primesieve because of the same issue:
# https://github.com/kimwalisch/primesieve
$ ikos-scan cmake .. -DBUILD_SHARED_LIBS=OFF
$ ikos-scan make
Scanning dependencies of target libprimesieve-static
[ 4%] Building CXX object CMakeFiles/libprimesieve-static.dir/src/api-c.cpp.o
[ 8%] Building CXX object CMakeFiles/libprimesieve-static.dir/src/api.cpp.o
...
[100%] Linking CXX executable primesieve
[100%] Built target primesieve
Analyze primesieve? [Y/n] Y
[*] Running ikos primesieve.bc -o primesieve.db
[*] Running ikos preprocessor
[*] Running ikos analyzer
[*] Translating LLVM bitcode to AR
ikos-analyzer: /tmp/ikos-qrPPF6/primesieve.pp.bc: error: unexpected null pointer in llvm::DICompositeType with DW_TAG_structure_type or DW_TAG_class_type tag
ikos: error: a run-time error occuredikos also fails to analyse libpopcnt but the error is different from last time:
# https://github.com/kimwalisch/libpopcnt
$ ikos-scan cmake ..
$ ikos-scan make
Scanning dependencies of target benchmark
[ 16%] Building CXX object CMakeFiles/benchmark.dir/benchmark.cpp.o
[ 33%] Linking CXX executable benchmark
...
[100%] Built target test1
Analyze benchmark? [Y/n] Y
[*] Running ikos benchmark.bc -o benchmark.db
[*] Running ikos preprocessor
[*] Running ikos analyzer
[*] Translating LLVM bitcode to AR
ikos-analyzer: /tmp/ikos-m3za0s/benchmark.pp.bc: error: unexpected llvm::BinaryOperator (opcode: add)
ikos: error: a run-time error occuredfrom ikos.
arthaud
commented on August 23, 2024
Hi again, @kimwalisch:
For primesieve, I think the error has been fixed with baecd7f. Please recompile ikos (master branch) and try again.
For libpopcnt, the error is tracked here: #41. I will fix this soon.
from ikos.
kimwalisch
commented on August 23, 2024
The error message has changed using your latest code:
Analyze primesieve? [Y/n] Y
[*] Running ikos primesieve.bc -o primesieve.db
[*] Running ikos preprocessor
[*] Running ikos analyzer
[*] Translating LLVM bitcode to AR
ikos-analyzer: /tmp/ikos-RnR8iJ/primesieve.pp.bc: error: unexpected tag for union member of llvm::DICompositeType
ikos: error: a run-time error occuredfrom ikos.
arthaud
commented on August 23, 2024
This error has been fixed in 94f1251, please try again.
from ikos.
kimwalisch
commented on August 23, 2024
The previous error has been fixed. But here is a new one ;-)
Analyze primesieve? [Y/n] Y
[*] Running ikos primesieve.bc -o primesieve.db
[*] Running ikos preprocessor
[*] Running ikos analyzer
[*] Translating LLVM bitcode to AR
error: type of parameter %7 of function call 'call @_ZN10primesieve13SievingPrimesC2EPNS_4EratERNS_8PreSieveE($2, %3, %7)' does not match the function type ({0: ui64, 8: ui64, 16: ui64, 24: ui8*, 32: {0: {0: {0: {0: {0: ui8*}}}}}}* != {0: si64, 8: si64, 16: si64, 24: si8*, 32: {0: {0: {0: {0: {0: si8*}}}}}}*)
error: type of parameter %8 of function call 'call @_ZN10primesieve10PrimeSieveC2EPS0_($3, %8)' does not match the function type ({0: si32 (...)**, 8: si64, 16: si64, 24: {0: [6 x si64]}, 72: double, 80: si64, 88: si64, 96: double, 104: si32, 108: si32, 112: {...}*, 120: {0: si64, 8: si64, 16: si64, 24: si8*, 32: {0: {0: {0: {0: {0: si8*}}}}}}}* != {0: si32 (...)**, 8: ui64, 16: ui64, 24: {0: [6 x ui64]}, 72: double, 80: ui64, 88: ui64, 96: double, 104: si32, 108: si32, 112: {...}*, 120: {0: ui64, 8: ui64, 16: ui64, 24: ui8*, 32: {0: {0: {0: {0: {0: ui8*}}}}}}}*)
ikos-analyzer: /tmp/ikos-8WNsCU/primesieve.pp.bc: error: type checker
ikos: error: a run-time error occurred
from ikos.
arthaud
commented on August 23, 2024
Could you please send me primesieve.bc?
I am getting a different error than you:
$ ikos primesieve.bc
[*] Running ikos preprocessor
[*] Running ikos analyzer
[!] ikos was compiled in debug mode, the analysis might be slow
[*] Translating LLVM bitcode to AR
ikos-analyzer: /var/folders/9g/hvg_xszs3q79k8tvtqhm_q5s5y3dxb/T/ikos-12EIuh/primesieve.pp.bc: error: function @_ZNSt3__16__treeINS_12__value_typeINS_12basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEEN12_GLOBAL__N_18OptionIDEEENS_19__map_value_compareIS7_SA_NS_4lessIS7_EELb1EEENS5_ISA_EEE16__construct_nodeIJRKNS_4pairIKS7_S9_EEEEENS_10unique_ptrINS_11__tree_nodeISA_PvEENS_22__tree_node_destructorINS5_ISQ_EEEEEEDpOT_ has more than one ehresume block (use the -mergereturn pass?)
ikos: error: a run-time error occurred
from ikos.
kimwalisch
commented on August 23, 2024
Could you please send me primesieve.bc?
Here it is: primesieve.bc.zip
from ikos.
arthaud
commented on August 23, 2024
Thanks, I can reproduce the error. I will need more time to investigate.
from ikos.
arthaud
commented on August 23, 2024
Commit caad19f should fix the issue with primesieve.
If you still have problems, please open new issues.
I would like to have one different thread per error message to keep track of the different (often unrelated) bugs.
Thank you.
from ikos.
Related Issues (20)
- Installation via Homebrew fails on Ubuntu 20.04 HOT 19
- Is there any documents about AR? HOT 2
- Typo in doc string HOT 1
- `analyzer`: Install python scripts using alternative to `easy_install`
- brew install nasa-sw-vnv/core/ikos fails at Apron patch HOT 5
- `analyzer`: Installation script assumes `pip` tool is available
- `analyzer`: Installation script tries to install python package as system library
- Bump copyright years HOT 1
- IKOS tool reports a Copyright year that doesn't include latest changes
- Release IKOS 3.2-rc1
- Release IKOS 3.2 HOT 1
- This code seems to have a double free issue. HOT 1
- Error due to lack of import HOT 2
- TypeError in ikos-view with pygments 2.17.2
- Dependency on ncurses is not listed HOT 1
- Release IKOS 3.3 HOT 1
- error: could not find ikos python module (no python files are installed) HOT 2
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