Comments (4)
nanjiangshu
commented on September 12, 2024
1
Hi @mircare. I've rewrote the function for CalSOV() and now it returns the same result as in http://proteinmodel.org/AS2TS/SOV/sov.cgi. It is fun to write the code in c++ again although I have moved to the Python world many years ago :)
Best,
Nanjiang
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mircare
commented on September 12, 2024
Hi,
I have just noticed that your SOV score sometimes differs from http://proteinmodel.org/AS2TS/SOV/sov.html -- e.g., http://as2ts.proteinmodel.org/AS2TS/DATA/JOBS/job_85611_180831_13r/SOV_85611.html -- and http://dna.cs.miami.edu/SOV/.
Best,
Mirko
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nanjiangshu
commented on September 12, 2024
Hi Mirko,
Thanks for pointing that out. Could you please send me an example so that I can debug?
Best,
Nanjiang
… On 31 Aug 2018, at 11:30, mircare ***@***.***> wrote:
Hi,
I have just noticed that your SOV score sometimes differs from http://proteinmodel.org/AS2TS/SOV/sov.html <http://proteinmodel.org/AS2TS/SOV/sov.html> -- e.g., http://as2ts.proteinmodel.org/AS2TS/DATA/JOBS/job_85611_180831_13r/SOV_85611.html <http://as2ts.proteinmodel.org/AS2TS/DATA/JOBS/job_85611_180831_13r/SOV_85611.html> -- and http://dna.cs.miami.edu/SOV/ <http://dna.cs.miami.edu/SOV/>.
Best,
Mirko
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nanjiangshu
commented on September 12, 2024
Sorry. You did give me the example already.
Best,
Nanjiang
… On 31 Aug 2018, at 12:03, Nanjiang Shu ***@***.***> wrote:
Hi Mirko,
Thanks for pointing that out. Could you please send me an example so that I can debug?
Best,
Nanjiang
> On 31 Aug 2018, at 11:30, mircare ***@***.*** ***@***.***>> wrote:
>
> Hi,
>
> I have just noticed that your SOV score sometimes differs from http://proteinmodel.org/AS2TS/SOV/sov.html <http://proteinmodel.org/AS2TS/SOV/sov.html> -- e.g., http://as2ts.proteinmodel.org/AS2TS/DATA/JOBS/job_85611_180831_13r/SOV_85611.html <http://as2ts.proteinmodel.org/AS2TS/DATA/JOBS/job_85611_180831_13r/SOV_85611.html> -- and http://dna.cs.miami.edu/SOV/ <http://dna.cs.miami.edu/SOV/>.
>
> Best,
> Mirko
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub <#1 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFkD-kL6s02z2y9_XhNXghCeJt5jMvFYks5uWQImgaJpZM4NFW18>.
>
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