naimmahi Goto Github PK

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

clean.hs

compbio_src

Introduction to Computational Biology - source Rmarkdown files

coronavirus

🦠 Novel Coronavirus (COVID-19) Tracker

deapp

DEAPP shiny App

deprecated-boot-camps

DEPRECATED: please see individual lesson repositories for current material.

docker-cheat-sheet

Docker Cheat Sheet

exploratoryplots

An R package to create complex heatmap and PCA plots.

grein

GREIN : GEO RNA-seq Experiments Interactive Navigator

grep2

GEO RNA-seq Experiments Processing Pipeline

heatstarseq_gh

A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets

iheatmapr

Complex, interactive heatmaps in R

ilearndeeplearning.py

This repository contains small projects related to Neural Networks and Deep Learning in general. Subject are closely linekd with articles I publish on Medium. I encourage you both to read as well as to check how the code works in the action.

intro-to-deep-learning-using-r

Source code for 'Introduction to Deep Learning Using R' by Taweh Beysolow II

jbcb_twostepintegrated

jhuphd

Information for Graduating PhDs from JHU

morpheus.r

R interface to morpheus.js heatmap widget

ngseasy

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

recount-website

Code for the Recount project

rna-seq-analysis

RNAseq analysis notes from Tommy Tang

rna-seq-docker

rna-seq-pipelines

Computational pipelines for processing and analysis of LINCS RNA-seq data

rnaseq_protocol

From short reads to differential expression

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqsamplesize

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/RnaSeqSampleSize.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=RnaSeqSampleSize.

rnatoy

A proof of concept RNA-Seq pipeline with Nextflow

rocker-versioned

Run current & prior versions of R using docker

rpackages

R package development - the Leek group way!

sartools

Statistical Analysis of RNA-Seq Tools

scater

Single cell analysis tools for expression from RNA-seq in R