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munskygroup's Projects

fish_processing icon fish_processing

Repository to automatically process ​Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).

mlrose icon mlrose

Python package for implementing a number of Machine Learning, Randomized Optimization and SEarch algorithms.

pycro-manager-munsky icon pycro-manager-munsky

A "severed" fork of Pycro-manager v0.23 patched for compatibility with latest versions of NumPy

rsnaped icon rsnaped

A library to quantify and design single-molecule gene expression experiments.

rsnapsim icon rsnapsim

RNA Sequence to NAscent Protein simulator

ssit icon ssit

Stochastic System Identification Toolkit (SSIT) to model, analyze and design single-cell experiments

uqbio2021 icon uqbio2021

This is the repository for the 2021 uq-bio Summer School

uqbio2022 icon uqbio2022

2nd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School

uqbio2023 icon uqbio2023

3rd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School

uqbio2024 icon uqbio2024

Repository of codes and notebooks used during the 2024 UQ-Bio Summer School.

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