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I'm working at the Institut Pasteur. My main focus is on imaging-based biomedical research. These developments are open-source and are reflected in the various repositories you can find here.

Florian's github stats

Florian Mueller's Projects

big-fish icon big-fish

Toolbox for the analysis of smFISH images.

cellpose icon cellpose

a generalist algorithm for cellular segmentation

docsify icon docsify

🃏 A magical documentation site generator.

hotspot icon hotspot

Matlab package to quantify translation/transcription hotspots

imjoy-docs icon imjoy-docs

ImJoy Docs: Interactive documentation powered by ImJoy and docsify

jupyter-engine-manager icon jupyter-engine-manager

A wrapper for @jupyterlab/services and other utility functions for connecting to Jupyter kernels in ImJoy.

kaibu icon kaibu

Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.

starfish icon starfish

*fish -- A standardized analysis pipeline for image-based transcriptomics

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