mshabbirhasan Goto Github PK

acm_timus_oj

Problems that I've solved from the ACM Timus Online Judge problem set

acm_uva_oj

Problems that I've solved from the ACM UVa Online Judge problem set

acm_zoj

Problems that I've solved from the ACM Zhejiang University Online Judge problem set

dib-lab

Issue tracker and Web site for the Lab for Data Intensive Biology at UC Davis.

genesis-indel

Genesis-indel is a computational pipeline to explore the unmapped reads to identify novel mutations that are initially missed in the original alignment. The genes containing such mutations can be investigated to gain important biological insights.

learntosolveit

Learn How to Solve a problem using your favorite programming language.

mshabbirhasan.github.io

Personal website of Mohammad Shabbir Hasan

read_region

Reads the DNA sequence from the reference genome for a given range, uses SeqAn library

scoring_multiread

somatichunter

A variant caller to call somatic SNPs and Indels from paired normal-tumor sequence alignment.

ups-indel

UPS-indel is a tool for "Universal Positioning System" of indels. It can be used to compare indels to see whether they are biologically equivalent or not. It can also be used to find out redundant indels. Moreover UPS-indel can be used to compare indels called by different tools.