Name: Mohammad Shabbir Hasan
Type: User
Company: Virginia Tech
Bio: Computer Science PhD student at Virginia Tech. Research Assistant of Computational Biology and Bioinformatics lab at Virginia Tech.
Location: Blacksburg, Virginia, USA
Blog: http://www.shabbirhasan.com
Mohammad Shabbir Hasan's Projects
Problems that I've solved from the ACM Timus Online Judge problem set
Problems that I've solved from the ACM UVa Online Judge problem set
Problems that I've solved from the ACM Zhejiang University Online Judge problem set
Issue tracker and Web site for the Lab for Data Intensive Biology at UC Davis.
Genesis-indel is a computational pipeline to explore the unmapped reads to identify novel mutations that are initially missed in the original alignment. The genes containing such mutations can be investigated to gain important biological insights.
Learn How to Solve a problem using your favorite programming language.
Personal website of Mohammad Shabbir Hasan
Reads the DNA sequence from the reference genome for a given range, uses SeqAn library
A variant caller to call somatic SNPs and Indels from paired normal-tumor sequence alignment.
UPS-indel is a tool for "Universal Positioning System" of indels. It can be used to compare indels to see whether they are biologically equivalent or not. It can also be used to find out redundant indels. Moreover UPS-indel can be used to compare indels called by different tools.