Comments (3)
Hi @yqy6611 -
Yes, those plots can get buggy. Just FYI, the rest of the program still works even when those plots fail.
If you run the program in debug mode (with -d
), more output will be created to explain why the plots aren't working.
Best,
Matt
from drep.
Hi all,
I ran into the same issues while running a dereplication job.
I don't know if it help, but here are the error messages :
Failed to make plot #5: list index out of range
Traceback (most recent call last):
File "/home/guest-biom/miniconda3/envs/dRep/lib/python3.12/site-packages/drep/d_analyze.py", line 108, in d_analyze_wrapper
plot_binscoring_from_wd(wd, plot_dir, **kwargs)
File "/home/guest-biom/miniconda3/envs/dRep/lib/python3.12/site-packages/drep/d_analyze.py", line 369, in plot_binscoring_from_wd
plot_winner_scoring_complex(Wdb, Sdb, Cdb, Gdb, plot_dir = plot_dir, **kwargs)
File "/home/guest-biom/miniconda3/envs/dRep/lib/python3.12/site-packages/drep/d_analyze.py", line 734, in plot_winner_scoring_complex
g.annotate("{0:.1f}".format(vals[i]), (p.get_width(), p.get_y()+(p.get_height()/1.1) ), fontsize=8)
~~~~^^^
IndexError: list index out of range
Plotting winning genomes plot...
Failed to make plot #6: list index out of range
Traceback (most recent call last):
File "/home/guest-biom/miniconda3/envs/dRep/lib/python3.12/site-packages/drep/d_analyze.py", line 117, in d_analyze_wrapper
plot_winners_from_wd(wd, plot_dir, **kwargs)
File "/home/guest-biom/miniconda3/envs/dRep/lib/python3.12/site-packages/drep/d_analyze.py", line 403, in plot_winners_from_wd
plot_winners(Wdb, Gdb, Wndb, Wmdb, Widb, plot_dir = plot_dir, **kwargs)
File "/home/guest-biom/miniconda3/envs/dRep/lib/python3.12/site-packages/drep/d_analyze.py", line 840, in plot_winners
_make_scoring_plot(d,bars,**kwargs)
File "/home/guest-biom/miniconda3/envs/dRep/lib/python3.12/site-packages/drep/d_analyze.py", line 1384, in _make_scoring_plot
g.annotate("{0:.1f}".format(vals[i]), (p.get_width(), p.get_y()+(p.get_height()/1.1) ), fontsize=8)
from drep.
Fixed in version 3.5.0
from drep.
Related Issues (20)
- Inquiry on Optimal Workflow for Metagenomic Binning and Dereplication HOT 2
- Drep error with fastANI HOT 1
- Drep error with fastANI HOT 2
- Steps to implement checkm2 quality report to dRep HOT 8
- Halt: the pair-wise MASH clustering step HOT 5
- extra_weight_table flag HOT 3
- Issue with ANImf: 0% ANI despite similar nucleotide sequences HOT 11
- Is there any plan to add skani as ANI calculation method? HOT 2
- drep stoped during clustering HOT 9
- drep conda installation dependencies HOT 4
- dRep: Argument list too long HOT 3
- stuck on checkm HOT 1
- Question abunt the output of dRep HOT 1
- file exists but get os.path.isfile(genome), "{0} is not a file".format(genome) error HOT 10
- ValueError: mash isn't working- make sure its installed HOT 2
- checkM overwriting itself? HOT 4
- checkM failed, properly related HMM file HOT 1
- Contrast of text in dendograms HOT 1
- assert os.path.isfile(genome), "{0} is not a file".format(genome) AssertionError: ......./b1.fasta is not a file HOT 2
- Singularity image
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from drep.