Related Issues (14)
- list tools for harmonising GWAS summary stats and working with VCF files HOT 1
- repeating rows/SNPs in gwas HOT 1
- Convert OR and 95%CI to ES and SE HOT 2
- add VCF field for clumped top hits
- gwas2vcf JSON column names to VCF "columns"
- Make requirement for non-duplicated variants explicit
- Clarify ES as a β-like value
- Performance test TSV vs VCF HOT 1
- should provide WDL pipeline and component containers too HOT 2
- Make sure differences between case.control & continuous are clear
- replace study with trait
- make explicit that multiple traits can be stored in the VCF
- How to perform CAUSE with GWAS-VCF files? HOT 2
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from gwas-vcf-specification.