M. Kocher's Projects
Crystal library
A scala kernel for Jupyter
Rock-solid shell scripting
The Python programming language
cram to Unittest tool (No further development planned)
Curriculum Vitae
A Python library for building data applications: ETL, ML, Data Pipelines, and more.
Development Box built from Vagrant and puppet
Docker with Postgres, Python 2.7, Oracle Java 8 and PacBioTestData
Dot files
Exploring functional centric designs and patterns in Python
Build and manage real-life data science projects with ease.
A community-driven framework for managing your zsh configuration. Includes 40+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, macports, etc), over 80 terminal themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
Specifications for PacBio® native file formats
R Package for generating reports using SMRT-Link
A Python library for reading and writing PacBio® data files
CLI tools and add-ons for PacBio's core APIs
A swiss-army knife for interrogating PacBio® HDF5 files (cmp.h5, bas.h5)
PacBio Workflow Engine used in SMRT-Link
Examples of using pbcommand
Misc internal tools and random utils
Scala Offline plotting library using plotly.js and selenium for static plots (EOL no further development)
Simple Example of Jenkins usage with Pylint, Pep8, and Coverage
Turn Pydantic defined Data Models into CLI Tools
A collection of design reviews of Python scripts, or packages to help leveling up your Python design skills