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autodmri

Automated characterization of noise distributions in diffusion MRI data

autotrimps

Automation for the idle incremental game 'Trimps'

axcal_analyse_notebook

axdiamfig

Figure and code for axon diameter paper

brainhack2018-leipzig-python

Collection of Jupyter notebook for the Python hands-on tutorial at BrainHack 2018 Leipzig

breakthrough_test

caliber_dist_fit_notebook

dipy

Diffusion MR Imaging in Python

dwi_preprocessing_notes

DWI preprocessing tutorial using only MRtrix, FSL and ANTS

ebc_dmri_preprocessing

ernst_angle

Flutter app to compute Ernst angle.

fastpli

Fiber Architecture Simulation Toolbox for 3D Polarized Light Imaging

fibernavigator

The original Fibernavigator: tool for vizualization of DTI and MRI data

gendirsplanar

gnlc_waveform

Study of the impact of Gradient Non-Linearity on B-tensor diffusion encoding.

gradunwarp

Gradient Unwarping in Python

intro-to-mri

This is Jupyter notebook/python code developed for a UW-Madison introductory MRI class.

lsd

Local Spherical Deconvolution (LSD): a diffusion MRI method

md-dmri

MATLAB code for Multidimensional Diffusion MRI

notebooks

Pile of ipython notebooks

phantomas

Create realistic digital phantoms in diffusion MRI.

quickviz

Ultra lightweight 3D MRI data matplotlib viewer.

realistic_axon_diameter

scilpy

The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

smt_gradnonlin

Exploring gradient non-linearity correction for SMT -like models

test

test

tractography

Graph-based alternate representation for dMRI probabilistic tractography.