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Ivan Molineris

Welcome to My GitHub Profile!

πŸ‘‹ Hi, I'm Ivan Molineris, Associate Professor at the Department of Life Sciences and Systems Biology at the UniversitΓ  degli Studi di Torino, specializing in Molecular Biology (SSD: BIO/11). My work spans across various disciplines, including Biotechnology for Neuroscience, with a strong focus on bioinformatics and the study of complex systems for quantitative biomedicine.

πŸŽ“ Academic Background

  • Associate Professor at the Department of Life Sciences and Systems Biology, UniversitΓ  degli Studi di Torino.
  • Engaged in teaching courses like Applied Bioinformatics, Introductory Bioinformatics, Data Science, and more, primarily focusing on Biotechnology for Neuroscience and Biological Sciences.

πŸ“š Research and Publications

  • My research interests include bioinformatics, computational biology, and the study of transcription factor binding sites through machine learning and AI.
  • Significant contributions to the understanding of RNA-seq analysis, artificial intelligence in the study of transcription factor binding sites, and the role of 3D DNA structure in RNA-DNA triple helices formation.
  • For a detailed list of my publications, visit my ORCID profile.

πŸ› οΈ Skills and Expertise

  • Expertise in molecular biology, bioinformatics, computational biology, and data science.
  • Proficient in developing and managing projects like the RNA-seq analysis pipeline nJARP, aiming for high reproducibility and customization.

🀝 Collaboration and Contributions

  • I encourage students to embark on projects like nJARP and AI4TFBS, promoting the publication of their results in open repositories.
  • Open to collaborations that push the boundaries of bioinformatics and computational biology.

πŸ“¬ Contact Me

  • For collaborations, questions, or to get in touch, feel free to contacti me.

πŸ” Current Projects

  • Not Just Another RNAseq Pipeline (nJARP): Focusing on integrating state-of-the-art procedures for RNA-seq analysis.
  • AI for the study of Transcription Factor Binding Sites (AI4TFBS): Exploring AI and machine learning approaches to improve TFBS discovery and modeling.
  • The role of 3D DNA structure in RNA-DNA triple helices formation: Investigating the impact of DNA structure deviations on gene regulation.

Feel free to explore my repositories below to see some of my work and contributions to various projects!

moxgreen's Projects

bcbb icon bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bookingmbc icon bookingmbc

Manage booking for MBC services and machines (Django and Fullcalendar)

django-su icon django-su

Login as any user from the Django admin interface, then switch back when done

maftools icon maftools

Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

mutprediction-with-shape icon mutprediction-with-shape

Github repository for the Liu and Samee 2020 publication, predicting single nucleotide mutation rate variations with a combination of DNA shape features and sequence context features.

pyroc icon pyroc

This is a python simple tool for generating charts for ROC curve

single-cell-tutorial icon single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

triplexator icon triplexator

Automatically exported from code.google.com/p/triplexator

wq icon wq

wq: a modular framework supporting mobile / web geographic data collection applications for citizen science, crowdsourcing, and VGI. Powered by Django REST Framework, jQuery Mobile, Mustache, d3, and Leaflet.

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